View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21213_high_34 (Length: 356)
Name: NF21213_high_34
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_high_34 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 31 - 263
Target Start/End: Original strand, 16498646 - 16498879
Alignment:
| Q |
31 |
tacaagcacaaatcatgcaagcaaggccgtatagaaggtgtcttcatcacatattcacattgatgcaaagctattcttgtcttgagacccttcttcgaga |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16498646 |
tacaagcacaaatcatgcaagcaaggccgtatagaaggtgtcttcatcacatattcacattgatgcaaagctattcttgtcttgagacccttcttcgaga |
16498745 |
T |
|
| Q |
131 |
ccgtttgtaggatctgtgttgatcaatttgctattatggtcttatc-aaaattttgttagagtctcaccctcctttaaaatgcaagaagcattaagatgg |
229 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16498746 |
ccgtttgtaggatctgtgttaatcaatttgctattatggtcttatcaaaaattttgttagagtctcaccctcctttaaaatgcaagaagcattaagatgg |
16498845 |
T |
|
| Q |
230 |
atatacattttaacctactattttagtgtttctt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
16498846 |
atatacattttaacctactattttagtgtttctt |
16498879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University