View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21213_high_39 (Length: 311)

Name: NF21213_high_39
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21213_high_39
NF21213_high_39
[»] chr8 (4 HSPs)
chr8 (16-292)||(15305318-15305602)
chr8 (16-292)||(15485687-15485971)
chr8 (10-94)||(30714923-30715003)
chr8 (51-93)||(30722702-30722744)
[»] chr2 (4 HSPs)
chr2 (10-93)||(5836784-5836863)
chr2 (10-94)||(19438243-19438323)
chr2 (10-94)||(25445765-25445845)
chr2 (10-94)||(43288096-43288176)
[»] chr7 (2 HSPs)
chr7 (10-94)||(341000-341080)
chr7 (167-226)||(5997959-5998018)
[»] chr3 (3 HSPs)
chr3 (10-94)||(21882796-21882876)
chr3 (10-94)||(49487431-49487511)
chr3 (16-69)||(26830346-26830399)
[»] scaffold0014 (1 HSPs)
scaffold0014 (10-94)||(111247-111327)
[»] chr6 (1 HSPs)
chr6 (245-292)||(19816943-19816990)
[»] chr5 (4 HSPs)
chr5 (10-94)||(16672881-16672961)
chr5 (10-94)||(21171893-21171973)
chr5 (10-94)||(23054084-23054164)
chr5 (10-94)||(35265247-35265327)
[»] chr4 (5 HSPs)
chr4 (10-94)||(12659893-12659973)
chr4 (13-86)||(13999342-13999411)
chr4 (169-213)||(26057907-26057951)
chr4 (10-46)||(26081893-26081929)
chr4 (10-94)||(30674406-30674487)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 15305602 - 15305318
Alignment:
Q  16 atgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatgtgatgagacaaacattaatat 115  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  15305602 atgatgaacaacttaaattgattctgaagtactattcaaatcttagttcaaatgcgaacagtaatgtattttgctaatgtgatgagacaaacattaatat 15305503  T
Q  116 caataggagagagtgtgttagagaaagtgttgaaaaaggag------tagcattccttgtgaagataatatatcaaacac--tattattttggagaagag 207  Q
    |||| ||||||||||||||||||||||||||||||||||||      |||||||||||||||| ||||||||||||||||  ||||||||||||||||||    
T  15305502 caatgggagagagtgtgttagagaaagtgttgaaaaaggagtgtccatagcattccttgtgaaaataatatatcaaacactatattattttggagaagag 15305403  T
Q  208 tataataaaggatatagaccaaacctttctatcactcttgagaaacttgtattaaggattagtcttcgtcgtctcagagataatt 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  15305402 tataataaaggatatagaccaaacctttctatcactcttgagaaacttgtattaaggattagtcttcgtcatcttagagataatt 15305318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 15485971 - 15485687
Alignment:
Q  16 atgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatgtgatgagacaaacattaatat 115  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  15485971 atgatgaacaacttaaattgattctgaagtactattcaaatcttagttcaaatgcgaacagtaatgtattttgctaatgtgatgagacaaacattaatat 15485872  T
Q  116 caataggagagagtgtgttagagaaagtgttgaaaaaggag------tagcattccttgtgaagataatatatcaaacac--tattattttggagaagag 207  Q
    |||| ||||||||||||||||||||||||||||||||||||      |||||||||||||||| ||||||||||||||||  ||||||||||||||||||    
T  15485871 caatgggagagagtgtgttagagaaagtgttgaaaaaggagtgtccatagcattccttgtgaaaataatatatcaaacactatattattttggagaagag 15485772  T
Q  208 tataataaaggatatagaccaaacctttctatcactcttgagaaacttgtattaaggattagtcttcgtcgtctcagagataatt 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  15485771 tataataaaggatatagaccaaacctttctatcactcttgagaaacttgtattaaggattagtcttcgtcatcttagagataatt 15485687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 30715003 - 30714923
Alignment:
Q  10 aagaatatgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatg 94  Q
    ||||| ||||| |||||||| ||||||| |||||||||    |||||||||||||||| | | |||| ||||||||||| |||||    
T  30715003 aagaaaatgataaacaacttgaattggtcctgaagtac----catatcttagttcaaacgaggacatcaatgtattttgttaatg 30714923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 30722744 - 30722702
Alignment:
Q  51 tcatatcttagttcaaatgtgaacattaatgtattttgctaat 93  Q
    ||||||||||||||||| | |||||||||||||||||| ||||    
T  30722744 tcatatcttagttcaaacgagaacattaatgtattttgttaat 30722702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 5836863 - 5836784
Alignment:
Q  10 aagaatatgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaat 93  Q
    ||||| ||||| |||||||| ||||||| |||||||||    |||||||||||||||| | |||||||||||||||||| ||||    
T  5836863 aagaaaatgataaacaacttgaattggtcctgaagtac----catatcttagttcaaacgagaacattaatgtattttgttaat 5836784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 19438323 - 19438243
Alignment:
Q  10 aagaatatgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatg 94  Q
    ||||| ||||| |||||||| ||||||| |||||||||    |||||||||||||||| | | |||| ||||||||||| |||||    
T  19438323 aagaaaatgataaacaacttgaattggtcctgaagtac----catatcttagttcaaacgaggacatcaatgtattttgttaatg 19438243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 25445845 - 25445765
Alignment:
Q  10 aagaatatgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatg 94  Q
    ||||| ||||| |||||||| ||||||| |||||||||    |||||||||||||||| | | |||| ||||||||||| |||||    
T  25445845 aagaaaatgataaacaacttgaattggtcctgaagtac----catatcttagttcaaacgaggacatcaatgtattttgttaatg 25445765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 43288176 - 43288096
Alignment:
Q  10 aagaatatgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatg 94  Q
    ||||| ||||| |||||||| ||||||| |||||||||    |||||||||||||||| | | |||| ||||||||||| |||||    
T  43288176 aagaaaatgataaacaacttgaattggtcctgaagtac----catatcttagttcaaacgaggacatcaatgtattttgttaatg 43288096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 341080 - 341000
Alignment:
Q  10 aagaatatgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatg 94  Q
    ||||| ||||| |||||||| |||||||||||||||||    |||||||||||||||| | | |||| ||||||||||| |||||    
T  341080 aagaaaatgataaacaacttgaattggttctgaagtac----catatcttagttcaaacgaggacatcaatgtattttgttaatg 341000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 5997959 - 5998018
Alignment:
Q  167 tgtgaagataatatatcaaacactattattttggagaagagtataataaaggatatagac 226  Q
    |||||||||||||| || ||||||| || ||| |||||||||||||||| ||| ||||||    
T  5997959 tgtgaagataatatctctaacactaataatttagagaagagtataataacggagatagac 5998018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 21882796 - 21882876
Alignment:
Q  10 aagaatatgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatg 94  Q
    ||||| ||||| |||||||| |||||||||||||||||    |||||||||||||||| | | |||| ||||||||||| |||||    
T  21882796 aagaaaatgataaacaacttgaattggttctgaagtac----catatcttagttcaaacgaggacatcaatgtattttgttaatg 21882876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 49487511 - 49487431
Alignment:
Q  10 aagaatatgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatg 94  Q
    ||||| ||||| |||||||| ||||||| |||||||||    |||||||||||||||| | | |||| ||||||||||| |||||    
T  49487511 aagaaaatgataaacaacttgaattggtcctgaagtac----catatcttagttcaaacgaggacatcaatgtattttgttaatg 49487431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 26830346 - 26830399
Alignment:
Q  16 atgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatg 69  Q
    |||||||||||||||| |||||| |||||||| |||||| |||| ||| |||||    
T  26830346 atgatgaacaacttaacttggttttgaagtaccattcatgtcttggtttaaatg 26830399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 111247 - 111327
Alignment:
Q  10 aagaatatgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatg 94  Q
    ||||| ||||| |||||||| ||||||| |||||||||    |||||||||||||||| | | |||| ||||||||||| |||||    
T  111247 aagaaaatgataaacaacttgaattggtcctgaagtac----catatcttagttcaaacgaggacatcaatgtattttgttaatg 111327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 19816990 - 19816943
Alignment:
Q  245 ttgagaaacttgtattaaggattagtcttcgtcgtctcagagataatt 292  Q
    |||||||||||||||||||||||  ||||| |||||| ||||||||||    
T  19816990 ttgagaaacttgtattaaggattgatcttcatcgtcttagagataatt 19816943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 16672881 - 16672961
Alignment:
Q  10 aagaatatgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatg 94  Q
    ||||| ||||| |||||||| ||||||| |||||||||    |||||||||||||||| | | |||| ||||||||||| |||||    
T  16672881 aagaaaatgataaacaacttgaattggtcctgaagtac----catatcttagttcaaacgaggacatcaatgtattttgttaatg 16672961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 21171973 - 21171893
Alignment:
Q  10 aagaatatgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatg 94  Q
    ||||| ||||| |||||||| ||||||| |||||||||    |||||||||||||||| | | |||| ||||||||||| |||||    
T  21171973 aagaaaatgataaacaacttgaattggtcctgaagtac----catatcttagttcaaacgaggacatcaatgtattttgttaatg 21171893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 23054164 - 23054084
Alignment:
Q  10 aagaatatgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatg 94  Q
    ||||| ||||| |||||||| ||||||| |||||||||    |||||||||||||||| | | |||| ||||||||||| |||||    
T  23054164 aagaaaatgataaacaacttgaattggtcctgaagtac----catatcttagttcaaacgaggacatcaatgtattttgttaatg 23054084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 35265327 - 35265247
Alignment:
Q  10 aagaatatgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatg 94  Q
    ||||| ||||| |||||||| ||||||| |||||||||    |||||||||||||||| | | |||| ||||||||||| |||||    
T  35265327 aagaaaatgataaacaacttgaattggtcctgaagtac----catatcttagttcaaacgaggacatcaatgtattttgttaatg 35265247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 12659973 - 12659893
Alignment:
Q  10 aagaatatgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatg 94  Q
    ||||| ||||| |||||||| ||||||| |||||||||    |||||||||||||||| | | |||| ||||||||||| |||||    
T  12659973 aagaaaatgataaacaacttgaattggtcctgaagtac----catatcttagttcaaacgaggacatcaatgtattttgttaatg 12659893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 13999342 - 13999411
Alignment:
Q  13 aatatgatgaacaacttaaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattt 86  Q
    |||||||||||||| || ||||||| ||||||||    |||||||||||||||| || | ||| ||||||||||    
T  13999342 aatatgatgaacaatttgaattggtcctgaagta----tcatatcttagttcaagtgaggacactaatgtattt 13999411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 26057951 - 26057907
Alignment:
Q  169 tgaagataatatatcaaacactattattttggagaagagtataat 213  Q
    |||||||||||| |||||||||  || ||||||||||||||||||    
T  26057951 tgaagataatatctcaaacactgctaatttggagaagagtataat 26057907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 26081929 - 26081893
Alignment:
Q  10 aagaatatgatgaacaacttaaattggttctgaagta 46  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  26081929 aagaaaatgatgaacaacttaaattggtcctgaagta 26081893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 30674487 - 30674406
Alignment:
Q  10 aagaatatgatgaacaactt-aaattggttctgaagtactattcatatcttagttcaaatgtgaacattaatgtattttgctaatg 94  Q
    ||||| ||||| |||||||| |||||||||| |||||||    |||||||||||||||| | | |||| ||||||||||| |||||    
T  30674487 aagaaaatgataaacaacttgaaattggttcagaagtac----catatcttagttcaaacgaggacatcaatgtattttgttaatg 30674406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University