View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_high_47 (Length: 285)
Name: NF21213_high_47
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 30527255 - 30527017
Alignment:
| Q |
20 |
aggttcactatgatcctaatattaagggtacccttggttatggcaagatcaaaggattatctggtatgactgctcaggaactgttcttatggtttcctgt |
119 |
Q |
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| T |
30527255 |
aggttcactatgatcctaatattaagggtacccttggttatggcaagatcaaaggattatctggtatgactgctcaggaactgttcttatggtttcctgt |
30527156 |
T |
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| Q |
120 |
taagggcattcgtgttgatctacctagctctggtcttattcactttgatgttggtgttgctgataaacaattctctttgtctctctttgaagatcctcct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30527155 |
taagggcattcgtgttgatctacctagctctggtcttattcactttgatgttggtgttgctgataaacaattctctttgtctctctttgaagatccccct |
30527056 |
T |
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| Q |
220 |
gattgcaaccctgaggt-ttttcatccattcttgatttg |
257 |
Q |
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| T |
30527055 |
gattgcaaccctgaggttttttcatccattcttgatttg |
30527017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 18695279 - 18695167
Alignment:
| Q |
109 |
tggtttcctgttaagggcattcgtgttgatctacctagctctggtcttattcactttgatgttggtgttgctgataaacaattctctttgtctctctttg |
208 |
Q |
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| T |
18695279 |
tggttccctgttatgagtattcgtgtcgatgttcctagctctggtttgatttactttgatgttggtgctgcttataaacaattctctttgtccctttttg |
18695180 |
T |
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| Q |
209 |
aagatcctcctga |
221 |
Q |
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| T |
18695179 |
aaactcctcctga |
18695167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 31656360 - 31656284
Alignment:
| Q |
148 |
tctggtcttattcactttgatgttggtgttgctgataaacaattctctttgtctctctttgaagatcctcctgattg |
224 |
Q |
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|||||| | |||| |||||| ||||| ||||| |||||||| ||||||| ||||||||||||| ||||||| |||| |
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| T |
31656360 |
tctggtttgattctctttgacattggtcttgcttataaacaactctctttctctctctttgaagttcctcctcattg |
31656284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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