View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_high_53 (Length: 266)
Name: NF21213_high_53
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_high_53 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 266
Target Start/End: Original strand, 9581948 - 9582210
Alignment:
| Q |
4 |
accgttggtaatggagagtaactgtttggagacaacagaaagagacttcaaatagaaaccatggttggcatcgttgtcgtcgatgaggaatttgaagacg |
103 |
Q |
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||||||||| || ||||| |||||||||||||| |||||||||||||| || |||||||||| |||| ||||||||||| |||||||||||||||||| |
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| T |
9581948 |
accgttggtgatagagagaaactgtttggagacgacagaaagagacttgaagtagaaaccattgttgatgtcgttgtcgtcaatgaggaatttgaagacg |
9582047 |
T |
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| Q |
104 |
gattcccaacactcgttaggtaaataaaaatctgttggtggaaccgccattgtgttttttcttcttctttttgagtcactagacattgatatttttctaa |
203 |
Q |
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| T |
9582048 |
gattcccaacagtcattaggtaaataaaaatctgttgctgcaaccgccattgcgtttcttcttcttctttttgagtcactagacattgatatttttctat |
9582147 |
T |
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| Q |
204 |
aaggagtcatcggtgactgaaccttactattgtttgagatagcagagaggttgtgtgactgcc |
266 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
9582148 |
aaggagtcatcgatgactgaaccttacaattgtttgagatagcagagaggttgtgtggctgcc |
9582210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 9587518 - 9587638
Alignment:
| Q |
16 |
ggagagtaactgtttggagacaacagaaagagacttcaaatagaaaccatggttggcatcgttgtcgtcgatgaggaatttgaagacggattcccaacac |
115 |
Q |
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| T |
9587518 |
ggagagaaactgtttggagacgacagaaagagacttgaagtagacaccatcgttgacgtcgttgccgtctatgaagaatttgaagacagattcccaacgg |
9587617 |
T |
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| Q |
116 |
tcgttaggtaaataaaaatct |
136 |
Q |
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| T |
9587618 |
tcattgggtaaagaaaaatct |
9587638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 29022133 - 29022182
Alignment:
| Q |
88 |
gaggaatttgaagacggattcccaacactcgttaggtaaataaaaatctg |
137 |
Q |
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| T |
29022133 |
gaggaatttgaagatgcattcccaacactcgtcaggtaaataaagatctg |
29022182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 533098 - 533145
Alignment:
| Q |
82 |
gtcgatgaggaatttgaagacggattcccaacactcgttaggtaaata |
129 |
Q |
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| T |
533098 |
gtcgatgacgaatttgaagacagattcccaacactcgtcgggtaaata |
533145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 548271 - 548317
Alignment:
| Q |
8 |
ttggtaatggagagtaactgtttggagacaacagaaagagacttcaa |
54 |
Q |
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| T |
548271 |
ttggtgatggagagaaactgttttgagacaacagagagagacttcaa |
548317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 645434 - 645495
Alignment:
| Q |
76 |
gttgtcgtcgatgaggaatttgaagacggattcccaacactcgttaggtaaataaaaatctg |
137 |
Q |
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| T |
645434 |
gttgtcgttgatgaggaatctgaagacacatacccaacaatcataaggtaaataaaaatctg |
645495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 6007763 - 6007804
Alignment:
| Q |
85 |
gatgaggaatttgaagacggattcccaacactcgttaggtaa |
126 |
Q |
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| T |
6007763 |
gatgaggaatttgaagatagattcccaacattcgttaggtaa |
6007804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 1547417 - 1547373
Alignment:
| Q |
85 |
gatgaggaatttgaagacggattcccaacactcgttaggtaaata |
129 |
Q |
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| T |
1547417 |
gatgatgaatttgaagatagattcccaacactcgtcaggtaaata |
1547373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 17642656 - 17642611
Alignment:
| Q |
87 |
tgaggaatttgaagacggattcccaacactcgttaggtaaataaaa |
132 |
Q |
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| T |
17642656 |
tgaggaatttgaagacagactcccaacactcatcaggtaaataaaa |
17642611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 15091337 - 15091276
Alignment:
| Q |
76 |
gttgtcgtcgatgaggaatttgaagacggattcccaacactcgttaggtaaataaaaatctg |
137 |
Q |
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| T |
15091337 |
gttgtcgttgatgatgaatctgaagacgcattcccaacactcatcgggtaaatagaaatctg |
15091276 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 13641998 - 13642039
Alignment:
| Q |
77 |
ttgtcgtcgatgaggaatttgaagacggattcccaacactcg |
118 |
Q |
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| T |
13641998 |
ttgtcgtggatgagaaatttgaagaccgattcccaacactcg |
13642039 |
T |
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