View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_high_56 (Length: 255)
Name: NF21213_high_56
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_high_56 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 219103 - 219357
Alignment:
| Q |
1 |
cagagccaaaagcctcagaagcagcaaaaactgcttcagatcaaatctgaattagattcttcttcttctttgtcatcggagatgatggtggttgatgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
219103 |
cagagccaaaagcctcagaagcagcaaaaactgcttcagatcaaatctgaattagattcttcttcttcttcgtcaacggagatgatggtggttgatgatg |
219202 |
T |
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| Q |
101 |
atgagaggtatgggctgagctggaggttggcaatggagacaaacaataatgtgcgtccttggaagacaatcccacttcgttgctacaagcatgttgagaa |
200 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219203 |
atgacatgtatgggctgagctggaggttggcaatggagacaaacaataatgtgcgtccttggaagacaatcccacttcgttgctacaagcatgttgagaa |
219302 |
T |
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| Q |
201 |
ttacatgattggtggacaatacgagcatgacatgaacctcatcgtggatgaaatt |
255 |
Q |
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| T |
219303 |
ttacatgattggtggacaatacgagcatgacatgaacctcatcgtggatgaaatt |
219357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 695663 - 695917
Alignment:
| Q |
1 |
cagagccaaaagcctcagaagcagcaaaaactgcttcagatcaaatctgaattagattcttcttcttctttgtcatcggagatgatggtggttgatgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
695663 |
cagagccaaaagcctcagaagcagcaaaaactgcttcagatcaaatctgaattagattcttcttcttcttcgtcaacggagatgatggtggttgatgatg |
695762 |
T |
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| Q |
101 |
atgagaggtatgggctgagctggaggttggcaatggagacaaacaataatgtgcgtccttggaagacaatcccacttcgttgctacaagcatgttgagaa |
200 |
Q |
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| T |
695763 |
atgacatgtatgggctgagctggaggttggcaatggagacaaacaataatgtgcgtccttggaagacaatcccacttcgttgctacaagcatgttgagaa |
695862 |
T |
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| Q |
201 |
ttacatgattggtggacaatacgagcatgacatgaacctcatcgtggatgaaatt |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
695863 |
ttacatgattggtggacaatacgagcatgacatgaacctcatcgtggatgaaatt |
695917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 732726 - 732980
Alignment:
| Q |
1 |
cagagccaaaagcctcagaagcagcaaaaactgcttcagatcaaatctgaattagattcttcttcttctttgtcatcggagatgatggtggttgatgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
732726 |
cagagccaaaagcctcagaagcagcaaaaactgcttcagatcaaatctgaattagattcttcttcttcttcgtcaacggagatgatggtggttgatgatg |
732825 |
T |
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| Q |
101 |
atgagaggtatgggctgagctggaggttggcaatggagacaaacaataatgtgcgtccttggaagacaatcccacttcgttgctacaagcatgttgagaa |
200 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
732826 |
atgacatgtatgggctgagctggaggttggcaatggagacaaacaataatgtgcgtccttggaagacaatcccacttcgttgctacaagcatgttgagaa |
732925 |
T |
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| Q |
201 |
ttacatgattggtggacaatacgagcatgacatgaacctcatcgtggatgaaatt |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
732926 |
ttacatgattggtggacaatacgagcatgacatgaacctcatcgtggatgaaatt |
732980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 856622 - 856876
Alignment:
| Q |
1 |
cagagccaaaagcctcagaagcagcaaaaactgcttcagatcaaatctgaattagattcttcttcttctttgtcatcggagatgatggtggttgatgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
856622 |
cagagccaaaagcctcagaagcagcaaaaactgcttcagatcaaatctgaattagattcttcttcttcttcgtcaacggagatgatggtggttgatgatg |
856721 |
T |
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| Q |
101 |
atgagaggtatgggctgagctggaggttggcaatggagacaaacaataatgtgcgtccttggaagacaatcccacttcgttgctacaagcatgttgagaa |
200 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
856722 |
atgacatgtatgggctgagctggaggttggcaatggagacaaacaataatgtgcgtccttggaagacaatcccacttcgttgctacaagcatgttgagaa |
856821 |
T |
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| Q |
201 |
ttacatgattggtggacaatacgagcatgacatgaacctcatcgtggatgaaatt |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
856822 |
ttacatgattggtggacaatacgagcatgacatgaacctcatcgtggatgaaatt |
856876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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