View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21213_high_57 (Length: 250)
Name: NF21213_high_57
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_high_57 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 8026234 - 8025993
Alignment:
| Q |
1 |
atgaataaataaggtgaataagtgaggagt----tgggggtttgaacccctccattccatatataatatagtgtctctatcaattaagatatgatcatag |
96 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| | |
|
|
| T |
8026234 |
atgaataaataaggtgaataagtaaggagtgagttgggggtttgaacccctccattccatatataatacagtgtctctatcaattaagatacgatcattg |
8026135 |
T |
|
| Q |
97 |
agaccggttaaatatcttatgttccaggccgattaattgccaagcccgccaccaaataagaactcacttctacagaggctcaagtgagtagagtttcctt |
196 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
8026134 |
agaccggttaaatatcttatgttccagaccgattaattgccaagcccgccaccaaataagaactcacttctaca-----taaagtgagtagagtttcctt |
8026040 |
T |
|
| Q |
197 |
ctcacctcatatcct-----cttcattgaagacacgtaatgacccta |
238 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
8026039 |
ctcacctcatatcctctcagcttcattgaagacacataatgacccta |
8025993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University