View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21213_high_62 (Length: 249)

Name: NF21213_high_62
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21213_high_62
NF21213_high_62
[»] chr1 (3 HSPs)
chr1 (66-240)||(48697514-48697685)
chr1 (58-119)||(48687222-48687283)
chr1 (4-32)||(48697483-48697511)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 66 - 240
Target Start/End: Original strand, 48697514 - 48697685
Alignment:
Q  66 catggctttagaatttacctataaatagaacctctatgatgccactttatcaattccaatacaaatacaaataaacaccaagatacgtttctaagagaga 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||    
T  48697514 catggctttagaatttacctataaatagaacctctatgatgccactttatcaattcaaatacaaatacaaataaaaaccaagatacgtttctatgagaga 48697613  T
Q  166 tcactaattaactaagccttgattttcattcaaaatatggatacaagaatgaattcctcctcggtcacattcatc 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  48697614 tcactaattaactaagccttgattttcattcaaaatatggatacaagaatgaat---tcctcggtcacattcatc 48697685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 48687222 - 48687283
Alignment:
Q  58 tagtgtcacatggctttagaatttacctataaatagaacctctatgatgccactttatcaat 119  Q
    ||||||||||||| |||||||||||||||||||| |||| ||||| ||||||||| ||||||    
T  48687222 tagtgtcacatggttttagaatttacctataaatggaacatctataatgccacttcatcaat 48687283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 48697483 - 48697511
Alignment:
Q  4 catgccttgtgtgtttccttagcaaaggt 32  Q
    |||||||||||||||||||||||||||||    
T  48697483 catgccttgtgtgtttccttagcaaaggt 48697511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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