View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_high_77 (Length: 234)
Name: NF21213_high_77
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_high_77 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 38940035 - 38939843
Alignment:
| Q |
20 |
acaaaagaaaacgaagtaatgatgatgaatgttaccgtagagattcatcatcatcaacaaggattcacggaaaacgaaaaggaaaatagcgataacgaat |
119 |
Q |
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| T |
38940035 |
acaaaagaaaacgaagtaatgatgatgaatgttaccgtagagattcatcatcatcaacaaggattcacggaaaacgaaaaggaaaatagcgataacgaat |
38939936 |
T |
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| Q |
120 |
gttacctgaaaatcgctgaaagctgtaaccgtttttggatgagatgaagcaacggtgattgaaggaattctcgatgaatgttgaagaagtggg |
212 |
Q |
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| T |
38939935 |
gttacctgaaaatcgctgaaagctgtaaccgtttttggatgagatgaagcaacggtgattgaaggaattctcgatgaatgttgaagaagtggg |
38939843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 55759652 - 55759755
Alignment:
| Q |
27 |
aaaacgaagtaatgatgatgaatgttaccgtagagattcatcatcatcaacaaggattcacggaaaacgaaaaggaaaatagcgataacgaatgttacct |
126 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| | |||||||||||| |||||||||| |
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| T |
55759652 |
aaaacgaaataatgatgatgaatgttaccgtaaagattcatcatcatcaataaggagtca-tgaaaacgaaaa-gcaaatagcgataatgaatgttacca |
55759749 |
T |
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| Q |
127 |
gaaaat |
132 |
Q |
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| T |
55759750 |
gaaaat |
55759755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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