View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_high_79 (Length: 227)
Name: NF21213_high_79
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_high_79 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 38940281 - 38940182
Alignment:
| Q |
128 |
gagaagaaatagcgatgacgaattaccgagaagatgttcgagctaaaacctgaaacggaacgaagattcatcagtgagtgaaaaagaaacgaagattcat |
227 |
Q |
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| T |
38940281 |
gagaagaaatagcgatgacgaattaccgagaagatgttcgagctaaaacctgaaacggaacgaagattcatcagtgagtgaaaaagaaacgaagattcat |
38940182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 38940396 - 38940347
Alignment:
| Q |
13 |
aatatcagaaatagaaaccaaaatattcatacagtatatcaagtgcagac |
62 |
Q |
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| T |
38940396 |
aatatcagaaatagaaaccaaaatattcatacagtatatcaagtgcagac |
38940347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 38940194 - 38940153
Alignment:
| Q |
186 |
aacgaagattcatcagtgagtgaaaaagaaacgaagattcat |
227 |
Q |
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| T |
38940194 |
aacgaagattcatcagtgagtgaaaaagaaacgaagattcat |
38940153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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