View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21213_high_85 (Length: 202)
Name: NF21213_high_85
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_high_85 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 30889074 - 30889275
Alignment:
| Q |
1 |
tcacatgaaataagagcttctagtccatcttttcccaatcttctatgccacgaaatacactatagaacacaaatgagaactgtatctagtgaaaattgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30889074 |
tcacatgaaataagagcttctagtccatcttttcccaatcttctatgccacggaatacactatagaacacaaatgagaactatatctagtgaaaattgaa |
30889173 |
T |
|
| Q |
101 |
acttcttatatccaaaacataagattaagaactatatctagtgaaaattgtcacatattacactgcgtgcggaacacaaatgagagtaaaacataaactg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30889174 |
acttcttatatccaaaacataagattaagaactatatctagtgaaaattgtaacatattacactgcgtgtggaacacaaatgagagtaaaacataaactg |
30889273 |
T |
|
| Q |
201 |
ta |
202 |
Q |
| |
|
|| |
|
|
| T |
30889274 |
ta |
30889275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University