View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21213_low_10 (Length: 575)
Name: NF21213_low_10
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_10 |
 | |
|
| [»] scaffold0627 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 15 - 556
Target Start/End: Original strand, 1599226 - 1599762
Alignment:
| Q |
15 |
cagagagtgatgatgatgaagttttcccnnnnnnngataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgctt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1599226 |
cagagagtgatgatgatgaagttttccctttttttgataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgc-----tt |
1599320 |
T |
|
| Q |
115 |
ctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1599321 |
ctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattc |
1599420 |
T |
|
| Q |
215 |
ggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
1599421 |
ggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtgtgaagcttgcgcc |
1599520 |
T |
|
| Q |
315 |
tatgttcaagcttcctctcagatcatttagggataaaagtgacgagatcaataatgaatccaagcgcccttttcgtgctgcgagattagtttcggggaaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1599521 |
tatgttcaagcttcctctcagatcatttagggataaaagtgacgagatcaataatgaatccaagcgcccttttcgtgctgcgagattagtttcggggaaa |
1599620 |
T |
|
| Q |
415 |
aaggatgagaacggtgataggggtagacaaagtctttatattgcttgcaacagtgattttgataagtttaatattgtgaattcttgcaatggtttacttt |
514 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1599621 |
aaggatgagaacagtgatacgggtagacaaagtctttatattgcttgcaacagtgattttgataagtttaatattgtgaattcttgcaatggtttacttt |
1599720 |
T |
|
| Q |
515 |
gtttgtctgacccatatttcggaaacccattagtgatctgca |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1599721 |
gtttgtctgacccatatttcggaaacccattagtgatctgca |
1599762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 50 - 556
Target Start/End: Complemental strand, 8536646 - 8536145
Alignment:
| Q |
50 |
gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac |
149 |
Q |
| |
|
||||||||| | |||||||| | ||| | |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536646 |
gataatcttccgtctcacgttattgctcacattctgcttcaacttccatttaagtcg-----cttctcatttgtaaatctgtgtgcaaaatttggaaaac |
8536552 |
T |
|
| Q |
150 |
attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| |||||||| || |
|
|
| T |
8536551 |
attgatttcagaatcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaagaacaatg |
8536452 |
T |
|
| Q |
250 |
taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctctcagatcatttagggata |
349 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||||||||||| | |||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536451 |
taccttcttgagtctgatcctcaaaagtttgagattggaagcaacgatcatgtgaaacttgtgcctatgttcaagcttcctctcagatcatttagggata |
8536352 |
T |
|
| Q |
350 |
aaagtgacgagatcaataatgaatccaagcgcccttttcgtgctgcgagattagtttcggggaaaaaggatgagaacggtgataggggtagacaaagtct |
449 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||| || ||| ||||||||||||||| |
|
|
| T |
8536351 |
aaagagaccagatcaataatgaatccaagcgaccttttcgtgctgcgagattagtttcagggaaaaacgacgagaacagttatacgggtagacaaagtct |
8536252 |
T |
|
| Q |
450 |
ttatattgcttgcaacagtgattttgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtg |
549 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
8536251 |
ttatattgcttgcaaaagagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtg |
8536152 |
T |
|
| Q |
550 |
atctgca |
556 |
Q |
| |
|
||||||| |
|
|
| T |
8536151 |
atctgca |
8536145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 113 - 556
Target Start/End: Complemental strand, 8530018 - 8529581
Alignment:
| Q |
113 |
ttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgat |
212 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8530018 |
ttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcgcactttgagcgatcaccaattagtctcatgat |
8529919 |
T |
|
| Q |
213 |
tcggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgca |
312 |
Q |
| |
|
||| || ||| ||||||| ||||||||| |||||||||||||||| || ||||| ||||||||||||||||||||| ||| | | ||||||||| |
|
|
| T |
8529918 |
tcgaacgc--gac----accgagtgtcaagaaccctgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgtcaagcttgca |
8529825 |
T |
|
| Q |
313 |
cctatgttcaagcttcctctcagatcatttagggataaaagtgacgagatcaataatgaatccaagcgcccttttcgtgctgcgagattagtttcgggga |
412 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
8529824 |
cctatattcaagcttcctctcagatcatttagggataaaagagaccagatcaataatgaatccaagcgcccttttcgtgctgccagattagtttcaggga |
8529725 |
T |
|
| Q |
413 |
aaaaggatgagaacggtgataggggtagacaaagtctttatattgcttgcaacagtgattttgataagtttaatattgtgaattcttgcaatggtttact |
512 |
Q |
| |
|
|||| || |||||| |||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8529724 |
aaaacgacgagaacagtgataggggtagacagagtctttatattgcttgcaacagagatattgataagtttgatattgtgaattcttgcaatggtttact |
8529625 |
T |
|
| Q |
513 |
ttgtttgtctgacccatatttcggaaacccattagtgatctgca |
556 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
8529624 |
ttgtttgtctgacccatcttttggaaacccaatagtgatctgca |
8529581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 112 - 556
Target Start/End: Original strand, 9073750 - 9074200
Alignment:
| Q |
112 |
cttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatga |
211 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| | | ||||||||| ||||||||||||||| ||| ||||||||| ||||||||||| | |||| |
|
|
| T |
9073750 |
cttctcatttgtaaatgtgtgtgcaaaatttggaaaagacttatttcagaaccacattttgctaaattgcaatttgagcgagcaccacttagttttatga |
9073849 |
T |
|
| Q |
212 |
ttcggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgc |
311 |
Q |
| |
|
|||||||| |||| || |||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | | | ||||||| |
|
|
| T |
9073850 |
ttcggacccttgacgatattagagtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttga |
9073949 |
T |
|
| Q |
312 |
acctatgttcaagcttcctctcagatcatttagggataaaagtgacgagatcaataatgaatccaagcgcccttttcgtgctgcgagattagtttcgggg |
411 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||| |||||||| |||||||| ||| |||||| |||||||||| ||||||||||||||| |
|
|
| T |
9073950 |
gcctatattcaagcttcctctcatatcatttagggataaaagaagcgagatcagtaatgaattcaatcgccctgttcgtgctgcaagattagtttcgggg |
9074049 |
T |
|
| Q |
412 |
aaaaaggatgagaacggtgataggggtag-acaaa-----gtctttatattgcttgcaacagtgattttgataagtttaatattgtgaattcttgcaatg |
505 |
Q |
| |
|
||||| |||||||| |||||||| ||| ||||| | ||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
9074050 |
aaaaacaatgagaacattgatagggatagaacaaaccgttatagttatactgcttgcaacaaatattatgataagtttgatattgtgaattcttgcaatg |
9074149 |
T |
|
| Q |
506 |
gtttactttgtttgtctgacccatatttcggaaacccattagtgatctgca |
556 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||| | ||||||||||| |
|
|
| T |
9074150 |
gtttactttgtttgtctgaaccaactaccggaaacccttcagtgatctgca |
9074200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 50 - 332
Target Start/End: Complemental strand, 8638030 - 8637753
Alignment:
| Q |
50 |
gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac |
149 |
Q |
| |
|
||||||||| |||| ||| |||| ||| ||||||||||||||| | |||||| || |||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
8638030 |
gataatcttccatcccacatcaccacccaaattctgcttcaactttccattaag-----tctcttctcatttgtaaatgtgtgtgcaagatttggaaaac |
8637936 |
T |
|
| Q |
150 |
attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg |
249 |
Q |
| |
|
| ||||||| ||| ||||||||||||||| ||| ||||||||| | || |||||||||||||||||||| ||||| | | ||| ||||||||| || |
|
|
| T |
8637935 |
aatgatttcggaaccacattttgctaaattgcaatttgagcgagcgccccttagtctcatgattcggacaaatgatggtagactagtgtcaagaaccatg |
8637836 |
T |
|
| Q |
250 |
taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctct |
332 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||| ||| | |||||||||| ||||| || ||||||||||| |
|
|
| T |
8637835 |
taccttcttgagtgtgatcatgaaaagtttgagattggaagcaacaatcatgtgaagcttgcgcctatatttaagcttcctct |
8637753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 50 - 385
Target Start/End: Original strand, 8547098 - 8547440
Alignment:
| Q |
50 |
gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac |
149 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||||||||| |||||| || ||||| |||| |||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
8547098 |
gataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttc-----tcatttgtaaatgtgtttgcaagatttggaaaac |
8547192 |
T |
|
| Q |
150 |
attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg |
249 |
Q |
| |
|
| | ||||||||| |||||||||||||| |||||||||| |||||| | || |||| |||||| |||| ||||| || | ||| ||||||||| || |
|
|
| T |
8547193 |
aattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaatgatttggacagatgacgatagactagtgtcaagaaccatg |
8547292 |
T |
|
| Q |
250 |
taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctct------------cagat |
337 |
Q |
| |
|
|||| |||||||||||| ||||||||||| |||||||||||||| ||| | ||||||||| ||||| |||||||||||||| || || |
|
|
| T |
8547293 |
taccatcttgagtgtgagcctgaaaagttcaagattggaagcaacaatcatgtgaagcttgatcctatattcaagcttcctcttcgtggttatatcaaat |
8547392 |
T |
|
| Q |
338 |
catttagggataaaagtgacgagatcaataatgaatccaagcgccctt |
385 |
Q |
| |
|
|||||||||| ||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
8547393 |
catttagggagaaaagtgacaggatcaagaataaatccaagcgccctt |
8547440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 112 - 332
Target Start/End: Complemental strand, 8645318 - 8645098
Alignment:
| Q |
112 |
cttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatga |
211 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||||||||||| | ||||||||| ||||||||||||||| | ||||||||||||||| | || ||||||||| |
|
|
| T |
8645318 |
cttctcatttgtgaatgtgtgtgcaagatttggaaaacacttatttcagaaccacattttgctaaattgaactttgagcgatcacaagtttgtctcatga |
8645219 |
T |
|
| Q |
212 |
ttcggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgc |
311 |
Q |
| |
|
|||||| |||||| | | ||| |||||||| ||||||||||||||||||| |||||||||||| | |||||||||||| |||| | |||||||| |
|
|
| T |
8645218 |
ttcggatagatgactgtagactagtgtcaagaactatgtaccttcttgagtgtgatcctgaaaagtttcaaattggaagcaacagtcgtgtcaagcttgc |
8645119 |
T |
|
| Q |
312 |
acctatgttcaagcttcctct |
332 |
Q |
| |
|
|||||| || ||||||||||| |
|
|
| T |
8645118 |
acctatatttaagcttcctct |
8645098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 50 - 332
Target Start/End: Original strand, 2873497 - 2873774
Alignment:
| Q |
50 |
gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac |
149 |
Q |
| |
|
||||||||| |||||||| | ||| ||| |||||| ||||||||||| |||||| || |||||||| |||| || ||||||||||| |||||| || |
|
|
| T |
2873497 |
gataatcttccatctcacttaactacccacattcttcttcaacttcccattaag-----tctcttctcatgtgtagatgtgtgtgcaaaacttggaatac |
2873591 |
T |
|
| Q |
150 |
attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg |
249 |
Q |
| |
|
| | ||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||| || ||||||| | ||| || |||| ||||||| | | |
|
|
| T |
2873592 |
acttatttcagaaccacattttgctaaattgcaatttgagcgagcaccagttagtttcgtgattcgaaatttagacaatataggagtgtcaagaaaccta |
2873691 |
T |
|
| Q |
250 |
taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctct |
332 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||| ||| | ||||||||| ||||| ||| |||||||||| |
|
|
| T |
2873692 |
taccttcttgagtgcgaagctgaaaagtttgagattggaagcaacaatcatgtgaagcttgaccctatattcgagcttcctct |
2873774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 112 - 332
Target Start/End: Original strand, 2844108 - 2844328
Alignment:
| Q |
112 |
cttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatga |
211 |
Q |
| |
|
|||||||| |||| || |||||||||||||||||| ||| | || |||||| ||||||||||||||| ||| ||||||||| ||||| ||||| || ||| |
|
|
| T |
2844108 |
cttctcatatgtagatgtgtgtgcaaaatttggaatacacttatatcagaaccacattttgctaaattgcaatttgagcgagcaccagttagtttcgtga |
2844207 |
T |
|
| Q |
212 |
ttcggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgc |
311 |
Q |
| |
|
|||| | ||| || |||| ||||||| | | |||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
2844208 |
ttcgaaatttagacaatataggagtgtcaagaaacctataccttcttgagtgtgaagctgaaaagtttgagattggaagcaaaaatcatgtgaagcttga |
2844307 |
T |
|
| Q |
312 |
acctatgttcaagcttcctct |
332 |
Q |
| |
|
||||| ||| |||||||||| |
|
|
| T |
2844308 |
ccctatattcgagcttcctct |
2844328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 112 - 332
Target Start/End: Original strand, 2855941 - 2856161
Alignment:
| Q |
112 |
cttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatga |
211 |
Q |
| |
|
|||||||| |||| || |||||||||||||||||| ||| | || |||||| ||||||||||||||| ||| ||||||||| ||||| ||||| || ||| |
|
|
| T |
2855941 |
cttctcatatgtagatgtgtgtgcaaaatttggaatacacttatatcagaaccacattttgctaaattgcaatttgagcgagcaccagttagtttcgtga |
2856040 |
T |
|
| Q |
212 |
ttcggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgc |
311 |
Q |
| |
|
|||| | ||| || |||| ||||||| | | |||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
2856041 |
ttcgaaatttagacaatataggagtgtcaagaaacctataccttcttgagtgtgaagctgaaaagtttgagattggaagcaaaaatcatgtgaagcttga |
2856140 |
T |
|
| Q |
312 |
acctatgttcaagcttcctct |
332 |
Q |
| |
|
||||| ||| |||||||||| |
|
|
| T |
2856141 |
ccctatattcgagcttcctct |
2856161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 52 - 228
Target Start/End: Complemental strand, 9004514 - 9004343
Alignment:
| Q |
52 |
taatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaacat |
151 |
Q |
| |
|
||||||| |||||||| ||||| || |||||||||||| ||||| |||||||| |||| | ||||||| || ||||||||| |||||||||||| |
|
|
| T |
9004514 |
taatcttccatctcacctcactaaccacattctgcttcatcttcccattaagtctcttc-----ttatttgtagatgtgtgtgcaagatttggaaaacaa |
9004420 |
T |
|
| Q |
152 |
tgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactat |
228 |
Q |
| |
|
| |||||| || ||||||||||||||| ||| ||||||||| ||||| ||||||||||||||||||| |||||||| |
|
|
| T |
9004419 |
ttatttcataaccacattttgctaaattgcaatttgagcgagcaccaattagtctcatgattcggacttatgactat |
9004343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 50 - 217
Target Start/End: Complemental strand, 8678883 - 8678721
Alignment:
| Q |
50 |
gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac |
149 |
Q |
| |
|
||||||||| |||| ||| ||| ||||| |||| ||||||| ||||| ||||| || |||| |||||||||||| ||||||||| ||||||||||| |
|
|
| T |
8678883 |
gataatcttccatcacacatcattgcccacattttgcttcatcttcccattaaatctcttc-----tcatttgtaaatgtgtgtgcaagatttggaaaac |
8678789 |
T |
|
| Q |
150 |
attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcgga |
217 |
Q |
| |
|
| | ||||||||| ||||||||||||||| | ||||||||||||||| | || ||||||||||||||| |
|
|
| T |
8678788 |
acttatttcagaaccacattttgctaaattgaactttgagcgatcacaagtttgtctcatgattcgga |
8678721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 450 - 556
Target Start/End: Original strand, 8547439 - 8547545
Alignment:
| Q |
450 |
ttatattgcttgcaacagtgattttgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtg |
549 |
Q |
| |
|
|||||||||||||||||| ||| |||| | ||| |||||||||||||||||| ||| || |||||||||||||| ||| | ||||||||| |||||| |
|
|
| T |
8547439 |
ttatattgcttgcaacagagatcgtgatcattttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtg |
8547538 |
T |
|
| Q |
550 |
atctgca |
556 |
Q |
| |
|
||||||| |
|
|
| T |
8547539 |
atctgca |
8547545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 2904060 - 2904161
Alignment:
| Q |
112 |
cttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatga |
211 |
Q |
| |
|
|||||||| |||| || |||||||||||||||||| ||| | ||||||||| | | || ||||||| ||| ||||||||| ||||| | ||| |||||| |
|
|
| T |
2904060 |
cttctcatatgtagatgtgtgtgcaaaatttggaatacacttatttcagaacctaaattcgctaaattgcaatttgagcgagcaccaatcagtttcatga |
2904159 |
T |
|
| Q |
212 |
tt |
213 |
Q |
| |
|
|| |
|
|
| T |
2904160 |
tt |
2904161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 556
Target Start/End: Original strand, 2844444 - 2844513
Alignment:
| Q |
487 |
attgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgca |
556 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||||| ||| | |||||| ||| |||||||| |||| |
|
|
| T |
2844444 |
attgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgca |
2844513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 556
Target Start/End: Original strand, 2856277 - 2856346
Alignment:
| Q |
487 |
attgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgca |
556 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||||| ||| | |||||| ||| |||||||| |||| |
|
|
| T |
2856277 |
attgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgca |
2856346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 556
Target Start/End: Original strand, 2873887 - 2873956
Alignment:
| Q |
487 |
attgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgca |
556 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||||| ||| | |||||| ||| |||||||| |||| |
|
|
| T |
2873887 |
attgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgca |
2873956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 50 - 556
Target Start/End: Original strand, 48360814 - 48361314
Alignment:
| Q |
50 |
gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac |
149 |
Q |
| |
|
||||||||| ||| |||| ||||||||| |||||| ||||||||||| |||||||| |||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
48360814 |
gataatcttccatatcacctcactgcccacattctccttcaacttcccattaagtctcttc-----ttatttgtaaatctgtgtgcaaaatttggaaaac |
48360908 |
T |
|
| Q |
150 |
attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg |
249 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| || |
|
|
| T |
48360909 |
actgatttcagaatcacaatttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccc-tgactatagaggagtgtcaagaaccatg |
48361007 |
T |
|
| Q |
250 |
taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctctcagatcatttagggata |
349 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| | | | |||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48361008 |
taccttcttgagtgtgatcctgaaaagtttgagattggaagcaacaaccatgtgaagcttacacctatattcaagcttcctctcagatcatttagggata |
48361107 |
T |
|
| Q |
350 |
aaagtgacgagatcaataatgaatccaagcgcccttttcgtgctgcgagattagtttcggggaaaaaggatgagaacggtgataggggtagacaaagtct |
449 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
48361108 |
aaagagacgatatcaataatgaatccaagcacccttttcgtgctgcaagattagtttcgggaaaaaatgatgagaacagtgataggggtagacaaagtct |
48361207 |
T |
|
| Q |
450 |
ttatattgcttgcaacagtgattttgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtg |
549 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |||||| |
|
|
| T |
48361208 |
ttatattgcttgcaacagagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgatccatctttgggaaacccgttagtg |
48361307 |
T |
|
| Q |
550 |
atctgca |
556 |
Q |
| |
|
||||||| |
|
|
| T |
48361308 |
atctgca |
48361314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 50 - 332
Target Start/End: Complemental strand, 35780986 - 35780709
Alignment:
| Q |
50 |
gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac |
149 |
Q |
| |
|
||||||||| |||| ||| |||| |||| |||| ||||||||||||| || || || |||| ||||||||| || |||||||| ||| || ||||| |
|
|
| T |
35780986 |
gataatcttccatcccacctcaccgcccacattttgcttcaacttcccataaaatctcttc-----tcatttgtagatgtgtgtgcataatctgaaaaac |
35780892 |
T |
|
| Q |
150 |
attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg |
249 |
Q |
| |
|
| ||||||||||| | || |||||||||| ||||||||||| ||||||| |||||||||| |||||||| | || | | || ||||||||| || |
|
|
| T |
35780891 |
aatgatttcagaaccgcaatttgctaaattgcactttgagctatcaccaactagtctcatggttcggacccgtcgcttagatcatgtgtcaagaaccctg |
35780792 |
T |
|
| Q |
250 |
taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctct |
332 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||| ||| ||| | ||||||||| || || || ||||||||||| |
|
|
| T |
35780791 |
caccttcttgagtgtgagcctgaaaagtttgagtttggaaggaacaatcttgtgaagcttgaccccatatttaagcttcctct |
35780709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 531
Target Start/End: Complemental strand, 35780548 - 35780498
Alignment:
| Q |
481 |
tttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatat |
531 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||| | |||||| |
|
|
| T |
35780548 |
tttaatattgtcaattcttgcaatggtttgctttgtttgtctaatccatat |
35780498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 50 - 556
Target Start/End: Complemental strand, 9444237 - 9443742
Alignment:
| Q |
50 |
gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac |
149 |
Q |
| |
|
||||||||| | |||||| ||||||||| |||||| |||| |||||| ||||||| ||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
9444237 |
gataatcttccgtctcacctcactgcccacattctccttcgacttccatttaagtctgttc-----tcatttgtaaatctgtgtgcaaagtttggaaaac |
9444143 |
T |
|
| Q |
150 |
attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg |
249 |
Q |
| |
|
| |||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| || | ||| ||||||| ||||||||| | |
|
|
| T |
9444142 |
aatgatttcagaatcacaatttgctaaattgcactttgagcgatcaccaattagtctcatgattcgaac--acgac----accgagtgtcaagaacccta |
9444049 |
T |
|
| Q |
250 |
taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctctcagatcatttagggata |
349 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||||||||||||| ||| | | |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9444048 |
taccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggata |
9443949 |
T |
|
| Q |
350 |
aaagtgacgagatcaataatgaatccaagcgcccttttcgtgctgcgagattagtttcggggaaaaaggatgagaacggtgataggggtagacaaagtct |
449 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| | || ||| |||||||||||||||| ||||| |
|
|
| T |
9443948 |
aaagagaccagatcaatattgaatccaagcgcccttttcgtgctgccagattagtttcagggaaaaacaacgacaacagtgataggggtagacagagtct |
9443849 |
T |
|
| Q |
450 |
ttatattgcttgcaacagtgattttgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtg |
549 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |
|
|
| T |
9443848 |
ttatattgattgcaacagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtg |
9443749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 50 - 332
Target Start/End: Complemental strand, 16717473 - 16717196
Alignment:
| Q |
50 |
gataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttcgcttctcatttgtaaatctgtgtgcaaaatttggaaaac |
149 |
Q |
| |
|
|||| |||| |||| ||| |||| |||| |||| ||||||||||||| || ||| || |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16717473 |
gatattcttccatcccacctcaccgcccacattttgcttcaacttcccatcaag-----tctcttctcatttgtaaatgtgtgtgcaaaatttggaaaag |
16717379 |
T |
|
| Q |
150 |
attgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttg |
249 |
Q |
| |
|
| ||||||||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||| || | ||||| | ||||| ||||||||| | |
|
|
| T |
16717378 |
aatgatttcagaatcgcattttgctaaattacactttgagcaatcaccaattagtctcatgattcgaacaagatactataaacgagtgtcaagaaccctc |
16717279 |
T |
|
| Q |
250 |
taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgcacctatgttcaagcttcctct |
332 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||||||||||||| ||| | |||| |||| ||||| |||| |||||||| |
|
|
| T |
16717278 |
taccttctagagtgcgatccagaaaagtttgagattggaagcaacaatcatgtgaatcttgagcctatattcagacttcctct |
16717196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 449 - 524
Target Start/End: Complemental strand, 16717133 - 16717058
Alignment:
| Q |
449 |
tttatattgcttgcaacagtgattttgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctga |
524 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||| || ||||| || || ||||||||||| |
|
|
| T |
16717133 |
tttatattgctggcaacagtgatcgtgataagtttaatattgtgaattcatgtaatggcttgctatgtttgtctga |
16717058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 112 - 332
Target Start/End: Complemental strand, 5703 - 5483
Alignment:
| Q |
112 |
cttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatga |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
5703 |
cttctcatttgtaaatgtgtgtgcaaaatttggaaagcaatgatttcagaaccacattttgctaaattacactttgagcgatcaccgattagtctcatga |
5604 |
T |
|
| Q |
212 |
ttcggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtatgaagcttgc |
311 |
Q |
| |
|
|||| || | ||||| ||||| ||||||||| | ||||||||||| || || ||| ||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
5603 |
ttcgaacaagatactatagacgagtgtcaagaaccctataccttcttgaatgcgatcctaaaaagtttgagattggaagcaacaatcatgtgaagcttga |
5504 |
T |
|
| Q |
312 |
acctatgttcaagcttcctct |
332 |
Q |
| |
|
||||| |||| |||| |||| |
|
|
| T |
5503 |
gcctatattcaggcttactct |
5483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 556
Target Start/End: Complemental strand, 5434 - 5328
Alignment:
| Q |
450 |
ttatattgcttgcaacagtgattttgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtg |
549 |
Q |
| |
|
||||||||||||||| || ||| ||||| |||| |||||||||||| || ||||| || || ||||||||| | ||| | ||||||||| |||||| |
|
|
| T |
5434 |
ttatattgcttgcaatagagatcgcgataattttagtattgtgaattcctgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtg |
5335 |
T |
|
| Q |
550 |
atctgca |
556 |
Q |
| |
|
||||||| |
|
|
| T |
5334 |
atctgca |
5328 |
T |
|
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