View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_16 (Length: 511)
Name: NF21213_low_16
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 11101308 - 11101347
Alignment:
| Q |
20 |
caaagcccttgctaccataacaaacaataagatataaaat |
59 |
Q |
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| T |
11101308 |
caaagcccttgctaccataacaaacaataagatataaaat |
11101347 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 460 - 505
Target Start/End: Original strand, 11101344 - 11101389
Alignment:
| Q |
460 |
aaatgaatttttagagaaatagcaacaaggaccgtgttcatctcac |
505 |
Q |
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| T |
11101344 |
aaatgaatttttagagaaatagcaacaaggaccttgttcatatcac |
11101389 |
T |
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