View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21213_low_17 (Length: 511)

Name: NF21213_low_17
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21213_low_17
NF21213_low_17
[»] chr7 (4 HSPs)
chr7 (341-491)||(38984522-38984671)
chr7 (162-491)||(10582949-10583292)
chr7 (394-491)||(356923-357020)
chr7 (224-286)||(5458577-5458639)
[»] chr3 (1 HSPs)
chr3 (16-129)||(6787212-6787323)
[»] chr1 (5 HSPs)
chr1 (157-286)||(16465686-16465822)
chr1 (395-491)||(16465554-16465650)
chr1 (426-491)||(50249155-50249220)
chr1 (203-253)||(50248297-50248347)
chr1 (341-398)||(50248348-50248405)
[»] chr4 (1 HSPs)
chr4 (314-414)||(6762518-6762618)
[»] chr5 (1 HSPs)
chr5 (157-262)||(1265276-1265388)
[»] chr6 (2 HSPs)
chr6 (157-202)||(9646155-9646200)
chr6 (157-202)||(9652172-9652217)


Alignment Details
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 341 - 491
Target Start/End: Complemental strand, 38984671 - 38984522
Alignment:
Q  341 gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaacccttttacacaggagcaaaagaagacattcc 440  Q
    |||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  38984671 gagtttgaattccaattgtgattgtactattagcatgttgcaacctattattcttttacctgctgaagcccttttacacaggagcaaaagaagacattcc 38984572  T
Q  441 ctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa 491  Q
    || ||||||||||| |||||||||||||| ||||||||| |||||||||||    
T  38984571 ct-gacaactaagggtctaaaacttttggttttgaaataccctttttggaa 38984522  T

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Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 162 - 491
Target Start/End: Complemental strand, 10583292 - 10582949
Alignment:
Q  162 aacccttatacagccagagtgcagaaattaaacaaaagaaaaag-------tagtagccatagcaggccaactatccaaacataacctaagctagcaaaa 254  Q
    ||||||| |||||||||||||||||||| | |||| ||||| ||       ||| ||||| | |||||||  |||| ||||| || |||||||| |||||    
T  10583292 aacccttgtacagccagagtgcagaaatgacacaagagaaagagagacaaatagcagccacaacaggccagttatcaaaacagaaactaagctaccaaaa 10583193  T
Q  255 acaaagagcaatcccaaaggcaatgagaaaac---------tgaacatactcttaaaatacttggcgatgtctttgggaaactccttttaaaaatgagtt 345  Q
    |||||||||  ||||||| |||| ||||||||         ||||||  |||  ||| ||||||| ||||||| |||||| |||||||| | ||||||||    
T  10583192 acaaagagcggtcccaaatgcaaagagaaaaccaagaacaatgaacaagctcacaaattacttggtgatgtctatgggaacctcctttttagaatgagtt 10583093  T
Q  346 tgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaacccttttacacaggagcaaaagaagacattccctgga 445  Q
    ||||  ||||||||||||||||  |||| ||| |||| |||||| || ||||  |||||||||||||||||||||||||| || ||||||||||||| ||    
T  10583092 tgaacgccatttgtgtttgtacctttagattgctgcagcctattcttttttt--ctgctgaaacccttttacacaggagcgaaggaagacattccctaga 10582995  T
Q  446 caactaaggttctaaaacttttggctttgaaataacctttttggaa 491  Q
    |||||||||||| ||||||||||| || |||||| || ||||||||    
T  10582994 caactaaggttccaaaacttttggtttggaaatacccattttggaa 10582949  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 394 - 491
Target Start/End: Complemental strand, 357020 - 356923
Alignment:
Q  394 tttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa 491  Q
    ||||| || ||||||||||||||||||||||| || ||||||||||||| || |||||| |||| ||||||||||| || |||||| ||| |||||||    
T  357020 ttttttcttctgaaacccttttacacaggagcgaaggaagacattccctagataactaatgttccaaaacttttggtttggaaataccctctttggaa 356923  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 5458577 - 5458639
Alignment:
Q  224 aactatccaaacataacctaagctagcaaaaacaaagagcaatcccaaaggcaatgagaaaac 286  Q
    ||||||| ||| | ||||||| |||||||||||||||| |||||||| |||||||||||||||    
T  5458577 aactatcaaaatagaacctaaactagcaaaaacaaagaacaatcccataggcaatgagaaaac 5458639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 6787323 - 6787212
Alignment:
Q  16 cagaatcagcatctaccaatctgaagagaacacagtccacacatgggtcagaggacttttgtagagtggcaggcagtctatttttcaccataaatcaaga 115  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||| |    
T  6787323 cagaatcagcatctaccaatctgaagagaacacagtccaca--tgggtaagaggacttttgtcgagtggcaggcagtctattattcaccatacatcaaca 6787226  T
Q  116 aatgaaagtgtgtc 129  Q
    ||||||||||||||    
T  6787225 aatgaaagtgtgtc 6787212  T

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Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 157 - 286
Target Start/End: Complemental strand, 16465822 - 16465686
Alignment:
Q  157 gcttgaacccttatacagccagagtgcagaaattaaacaaaagaaa-------aagtagtagccatagcaggccaactatccaaacataacctaagctag 249  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||       |||||| ||||| ||| ||||| ||||| ||||| ||||||||||||    
T  16465822 gcttgaacccttatacagccagagtgcagaaaaaacacaaaagaaagagagacaagtagcagccacagctggccagctatcaaaacagaacctaagctag 16465723  T
Q  250 caaaaacaaagagcaatcccaaaggcaatgagaaaac 286  Q
    |||||||||||||||||||||||||||||||||||||    
T  16465722 caaaaacaaagagcaatcccaaaggcaatgagaaaac 16465686  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 395 - 491
Target Start/End: Complemental strand, 16465650 - 16465554
Alignment:
Q  395 ttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa 491  Q
    |||||||||||||||||||||| ||| || ||||||| ||||||  || | |||||||||||||||||||||||| ||||||||| |||||||||||    
T  16465650 ttttcctgctgaaacccttttatacaagaacaaaagaggacatttactagccaactaaggttctaaaacttttggttttgaaataccctttttggaa 16465554  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 426 - 491
Target Start/End: Original strand, 50249155 - 50249220
Alignment:
Q  426 aaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa 491  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||    
T  50249155 aaaagaagacattccctagacaactaaggttctaaaacttttggttttgaaataccctttttggaa 50249220  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 50248297 - 50248347
Alignment:
Q  203 aagtagtagccatagcaggccaactatccaaacataacctaagctagcaaa 253  Q
    |||||||||||| | ||||| ||||||| ||||| ||||||||||||||||    
T  50248297 aagtagtagccacaacaggcaaactatcaaaacagaacctaagctagcaaa 50248347  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 50248348 - 50248405
Alignment:
Q  341 gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattcttttt 398  Q
    |||||| |||||||||||| ||||||| ||||| |||||||| |||||  ||||||||    
T  50248348 gagtttaaattccatttgtatttgtaccgttagattgttgcagcctatacttcttttt 50248405  T

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Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 314 - 414
Target Start/End: Original strand, 6762518 - 6762618
Alignment:
Q  314 tgtctttgggaaactccttttaaaaatgagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaaccctt 413  Q
    ||||||||| || |||||| | | || |||||  |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  6762518 tgtctttggtaacctccttctgagaacgagttcaaattccatttgtgtttgtaccgttagcttgttgcaacctattcttctttttcctgctgaaaccctt 6762617  T
Q  414 t 414  Q
    |    
T  6762618 t 6762618  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 157 - 262
Target Start/End: Original strand, 1265276 - 1265388
Alignment:
Q  157 gcttgaacccttatacagccagagtgcagaaattaaacaaaagaaa-------aagtagtagccatagcaggccaactatccaaacataacctaagctag 249  Q
    |||||||||||||||||||||||||||| ||| || ||||||||||       |||||||||||| | ||||||||||||| |||   ||||||||||||    
T  1265276 gcttgaacccttatacagccagagtgcaaaaactacacaaaagaaagagagacaagtagtagccacatcaggccaactatctaaattgaacctaagctag 1265375  T
Q  250 caaaaacaaagag 262  Q
    |||||||||||||    
T  1265376 caaaaacaaagag 1265388  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 9646155 - 9646200
Alignment:
Q  157 gcttgaacccttatacagccagagtgcagaaattaaacaaaagaaa 202  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||||    
T  9646155 gcttgaacccttatacagccaaagtgcaaaaattacacaaaagaaa 9646200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 9652172 - 9652217
Alignment:
Q  157 gcttgaacccttatacagccagagtgcagaaattaaacaaaagaaa 202  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||||    
T  9652172 gcttgaacccttatacagccaaagtgcaaaaattacacaaaagaaa 9652217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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