View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21213_low_20 (Length: 487)
Name: NF21213_low_20
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 5262495 - 5262279
Alignment:
| Q |
1 |
tctaaaaatctttaaataaaagtttaaattatataatctgaaggagagtatttttagaatattagaggacgcttgagaagagagaagagcaataacgaag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5262495 |
tctaaaagtctttaaataaaagtttaaattatataatcagaaggagagtatttttagaatattagaggacgcttgagaagagagaagagcaatagcgaag |
5262396 |
T |
|
| Q |
101 |
cattacaaaggcacgggttggccacgactcatcccattcaaaaggaannnnnnnnnc-acaggtaaatgacaaaaaatatctctgattttaaaacaaatt |
199 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5262395 |
cattacaaaggcacgggttgaccacgactcatcccattcaaaaggaatttttttttctacagataaatgac-aaaaatatctctgattttaaaacaaatt |
5262297 |
T |
|
| Q |
200 |
ttatgctggcccatccaa |
217 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5262296 |
ttatgctggcccatccaa |
5262279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 210 - 469
Target Start/End: Original strand, 5262587 - 5262845
Alignment:
| Q |
210 |
ccatccaaaatcaaaattgtgtgattcttgaaggnnnnnnnnctttctccaaaacatcatatttttcaagccctttcaaatataaaaaataaggtgatgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5262587 |
ccatccaaaatcaaaattgtgtgattcttgaagggtttttt--tttctccaaaacatcatatttttcaagccctttcaaatataaaaaataaggtgaggt |
5262684 |
T |
|
| Q |
310 |
tgcactcctttgatttattgnnnnnnnnattttatttgtaccttttgttgttattactttcctta----ccattctctcttctcacgtacattgtagaag |
405 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
5262685 |
cgcactcctttgatttattgtttttt---ttttatttataccttttgttgttgttactttccttacttaccattctctcttctcacgcacattgtagaag |
5262781 |
T |
|
| Q |
406 |
aaaagataaggagataatgtgggatgtaagaataatttgtgaatgatgggtggatatttatagg |
469 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5262782 |
aaaagataaggagagaatgtgggatgtaaagataatttgtgaatgatgggtggatatttatagg |
5262845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 466
Target Start/End: Original strand, 26203772 - 26203843
Alignment:
| Q |
394 |
acattgtagaagaaaagataaggagataatgtgggatgtaagaataatttgtgaatgatgggtggatatttat |
466 |
Q |
| |
|
|||||||||||||||||| ||||| | |||||| |||| || | |||||||||| ||||||||||||||||| |
|
|
| T |
26203772 |
acattgtagaagaaaagagaaggatagaatgtgagatggaatgagaatttgtgaa-gatgggtggatatttat |
26203843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University