View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_24 (Length: 444)
Name: NF21213_low_24
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 7 - 426
Target Start/End: Original strand, 44704602 - 44705027
Alignment:
| Q |
7 |
tagattattctcacatgaaacaagtaattacataagtctagtaattagtgtatcattggtttaaagggttcattcttataattacataagtctagtat-- |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | || ||| |
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| T |
44704602 |
tagattattctcacatgaaacaagtaattacataagtctagtaattagtgtatcattggtttaaagggttcattcttataaattcatatgaatattataa |
44704701 |
T |
|
| Q |
105 |
----ttttacgttcataagttagtgatattaatgcaataccaggaagatccactacaagataatggccagcagagtcctctgtccatgcagaattaggta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44704702 |
ttatttttacgttcataagttagtgatattaatgcaataccaggaagatccactacaagataatgggcagcagagtcctctgtccatgcagaattaggta |
44704801 |
T |
|
| Q |
201 |
caatatcttcaacaacagaagggcgtgccacaggtcttattactccataccttggagtacctctaacgttggtcattaaggacaaacaaattaacaacta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44704802 |
caatatcttcaacaacagaagggcgtgccacaggtcttattactccataccttggagtacctctaacgttggccattaaggacaaacaaattaacaacta |
44704901 |
T |
|
| Q |
301 |
atatgaaactgataagattgtaagaaattggtattgaagaaatgtgacaattaattttaatgcaacctatggaagctatatataatttgatcatataatt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44704902 |
atatgaaactgataagattgtaagaaattggtattgaagaaatgtgacaattaatttgcatgcaacctatggaagctatatataatttgatcatataatt |
44705001 |
T |
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| Q |
401 |
gcgtgatgtgttttccatgttttcct |
426 |
Q |
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| T |
44705002 |
gcgtgatgtgttttccatgttttcct |
44705027 |
T |
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