View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_25 (Length: 444)
Name: NF21213_low_25
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 5 - 435
Target Start/End: Complemental strand, 43552637 - 43552207
Alignment:
| Q |
5 |
ttctgctactattacatgaaaccttaaagcaagaaaaatggatttcaacagtaacatatatatgtgctgtagaaaaataatatgatataatgcactatat |
104 |
Q |
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| T |
43552637 |
ttctgcttctgttacatgaaaccttaaagcaagaaaaatggatttcaatagtaacatatatattggctgtagaaaaataatatgatataatgcattatac |
43552538 |
T |
|
| Q |
105 |
ttcttggttgattttgacccttcttaattcttattatattttattggatgtaagaagatagtgggggctcccaatatttttatcagttctctgaatttag |
204 |
Q |
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| T |
43552537 |
ttcttagttgattttgacccttcttaattcttattatattttattggatgtaagaagatagtgggggctcccaatatttttatcagttctctgaatttag |
43552438 |
T |
|
| Q |
205 |
aaagctacaaaaatttgatagtgtatgtttgtttgagaggaagagagagatttagggaaatttgattttcgaaatgtgagatattggaggtggaggacaa |
304 |
Q |
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| T |
43552437 |
aaaactacaaaaatttgatagtgtatgtttgtttgagaggaagagagagaattagggaaaattgattttctaaatgtgagatattggaggtggaggacaa |
43552338 |
T |
|
| Q |
305 |
aggtattattgtcaccttttccctgttcctatctaaatggattttattaatcaactttggcaacatgctcgtgtcttcctcaactagtccggttgttaca |
404 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43552337 |
aggtattattgtcaccttttccctgtttctatctaaatggattttattaatcaactttggcaacatgctcgtgtcttcctcaactagtccggttgttaca |
43552238 |
T |
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| Q |
405 |
agacaacatcataggttttttcaagtattat |
435 |
Q |
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| T |
43552237 |
agacaacatcataggttttttcaagtattat |
43552207 |
T |
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