View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21213_low_27 (Length: 427)
Name: NF21213_low_27
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 25 - 387
Target Start/End: Complemental strand, 13908010 - 13907649
Alignment:
| Q |
25 |
tgttcacatatataacatacacatatgcatattttgagagtgaaatgaccaatatatttttt-cttcttctaaatattagtaataaataatacaaaataa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13908010 |
tgttcacatatataacatacacatatgcatattttgagagtgaaatgaccaatatatttttttcttcttctaaatgttagtaataaataatacaaaataa |
13907911 |
T |
|
| Q |
124 |
gttttgtaagttatacactaacttatacgctaagggtgtgtttgtttccacatagaggttggaaagattgtgagaggagagaaagaccctagaaaggaaa |
223 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | ||||||||| |
|
|
| T |
13907910 |
gtttggtaagttatac--taacttatacgctaagggtgtgtttgtttccacatagaggttggaaagattgtgggatgagagaaagacaccggaaaggaaa |
13907813 |
T |
|
| Q |
224 |
ggtttcaattgtttagagcaacataaaaaggcatgggaaagaggcatattgatggggcccagacataaaagtgtttccacgctgatttgtgcagaaagag |
323 |
Q |
| |
|
|||||| ||||||| ||||||||||||| ||||| ||||| |||||||||| ||||||| ||| |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
13907812 |
ggtttccattgtttgaagcaacataaaaaaacatggaaaagaagcatattgat-gggcccacacacaaaattgtttccgcgctgatttgtgcagaaagag |
13907714 |
T |
|
| Q |
324 |
agtagaaagctcattcttatgttgaaaagtcacaaataccctagc-ttcaaattgtttccaacac |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
13907713 |
agtagaaagctcattcttatgttgaaaagtcacaaataccctcgcattcaaattgtttccaacac |
13907649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 365
Target Start/End: Original strand, 8745977 - 8746157
Alignment:
| Q |
184 |
ggaaagattgtgagaggagagaaagaccctagaaaggaaaggtttcaattgtttagagcaacataaaaaggcatgggaaagaggcatattgatggggccc |
283 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||||| || |||| || |||| || | ||| |||||||| ||||||| | ||||||||||||||| |
|
|
| T |
8745977 |
ggaaagattgtgagtggagagaaagaaagtggaaaggagagatttccatagtttggaataccatggaaaggcataggaaagaagaatattgatggggccc |
8746076 |
T |
|
| Q |
284 |
agacataaaagtgtttccacgctgatttgtgcagaaagagagtagaaagctcattcttatgttgaaaagtcacaaataccct |
365 |
Q |
| |
|
| || | ||| |||||||||||| || | |||||||| | | ||||| ||||||| |||| |||||||||| ||| ||||| |
|
|
| T |
8746077 |
acacttgaaattgtttccacgctagttagagcagaaagtgggaagaaa-ctcattcatatgatgaaaagtcataaacaccct |
8746157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 292
Target Start/End: Original strand, 4679477 - 4679618
Alignment:
| Q |
154 |
taagggtgtgtttgtttccac--atagaggttggaaagattgtgagaggagagaaagaccctagaaaggaaaggtttcaattgtttagagcaacataaaa |
251 |
Q |
| |
|
||||||| |||||||||| || |||||| ||||||||| |||| ||||||||||| | ||||||| ||||||| || |||| || || |||| || |
|
|
| T |
4679477 |
taagggtctgtttgtttcaactgatagagtgaggaaagattctgagtggagagaaagaaagtggaaaggagaggtttccatagtttggaacaccatagaa |
4679576 |
T |
|
| Q |
252 |
aggcatgggaaagaggcat-attgatggggcccagacataaa |
292 |
Q |
| |
|
||| || ||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
4679577 |
aggtataggaaagaagcatctttgatggggcccaaacataaa |
4679618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 160 - 387
Target Start/End: Complemental strand, 38481254 - 38481024
Alignment:
| Q |
160 |
tgtgtttgtttccaca--tagaggttggaaagattgtgagaggagagaaagaccctagaaaggaaaggtttcaattgtttagagcaacataaaaaggcat |
257 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
38481254 |
tgtgttagtttccacagatagaggttggaaagattgtgagaggagagaaagacaatggaaaggaaaggtttccattgtttggagcaacataaaaaggcat |
38481155 |
T |
|
| Q |
258 |
gggaaagaggcatattgatggggcccagacataaaagtgtttccacgctgatttgtgcagaaagagagtagaaagctcattcttatgttgaaaagtcaca |
357 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38481154 |
gggaaagaagcatattgatgggccccacacacaaaattgtttccacgctgatttgtgcagaaagagagtagaaagctcattcttatgtcaaaaagtcaca |
38481055 |
T |
|
| Q |
358 |
aataccctagc-ttcaaattgtttccaacac |
387 |
Q |
| |
|
|||||||| || ||||||||||||||||||| |
|
|
| T |
38481054 |
aatacccttgcattcaaattgtttccaacac |
38481024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 184 - 382
Target Start/End: Complemental strand, 48707531 - 48707333
Alignment:
| Q |
184 |
ggaaagattgtgagaggagagaaagaccctagaaaggaaaggtttcaattgtttagagcaacataaaaaggcatgggaaagaggcatattgatggggccc |
283 |
Q |
| |
|
|||||||||||||| ||| | || || || |||||||||| |||| ||||||| ||||||||||||||| ||| ||||||| | ||||||||||||||| |
|
|
| T |
48707531 |
ggaaagattgtgaggggacaaaatgaaactggaaaggaaagatttctattgtttggagcaacataaaaagacataggaaagaagaatattgatggggccc |
48707432 |
T |
|
| Q |
284 |
agacataaaagtgtttccacgctgatttgtgcagaaagagagtagaaagctcattcttatgttgaaaagtcacaaataccctagc-ttcaaattgtttcc |
382 |
Q |
| |
|
| ||| |||| ||||||| ||||| ||||||||||||| | ||||||| | |||||||||||||||||||||||||| |||| || |||||||||||||| |
|
|
| T |
48707431 |
acaca-aaaattgtttccgcgctggtttgtgcagaaagggtgtagaaaacccattcttatgttgaaaagtcacaaatgcccttgctttcaaattgtttcc |
48707333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 365
Target Start/End: Original strand, 21195197 - 21195411
Alignment:
| Q |
153 |
ctaagggtgtgtttgtttccac--atagaggttggaaagattgtgagaggagagaaagaccctagaaaggaaaggtttcaattgtttagagcaacataaa |
250 |
Q |
| |
|
|||||||| |||||||||| || || |||| ||||||||||||| ||||||||||| | ||||||| ||||||| ||||||| || || ||| | |
|
|
| T |
21195197 |
ctaagggtctgtttgtttctactgatggagggaggaaagattgtgaatggagagaaagaaagtggaaaggagaggtttccattgtttggaacaccatgga |
21195296 |
T |
|
| Q |
251 |
aaggcatgggaaagaggcat-attgatggggcccagacataaaagtgtttccacgctgatttgtgcagaaag-agagtagaaagctcattcttatgttga |
348 |
Q |
| |
|
||| ||| ||||||| | || ||||||||||||| || ||||| ||||||||| | | |||| |||||||| ||| ||||| |||||| ||| ||| |
|
|
| T |
21195297 |
aagacataggaaagaagaatctttgatggggcccacac-taaaattgtttccacaccggtttgagcagaaagtggagaagaaa-ctcatttttaaaatga |
21195394 |
T |
|
| Q |
349 |
aaagtcacaaataccct |
365 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
21195395 |
aaagtcacaaataccct |
21195411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 365
Target Start/End: Original strand, 39201662 - 39201843
Alignment:
| Q |
184 |
ggaaagattgtgagaggagagaaagaccctagaaaggaaaggtttcaattgtttagagcaacataaaaaggcatgggaaagaggcatattgatggggccc |
283 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||| |||||||||| || |||| | | |||| |||| ||| ||||||| | ||||||||||||||| |
|
|
| T |
39201662 |
ggaaagattgtgagtggagagaaagaaagtggaaaagaaaggtttccatagtttgaaatatcatagaaagacataggaaagaaggatattgatggggccc |
39201761 |
T |
|
| Q |
284 |
agacataaaagtgtttccacgctgatttgtgcagaaag-agagtagaaagctcattcttatgttgaaaagtcacaaataccct |
365 |
Q |
| |
|
| || | ||| ||||||| | || || | |||||||| ||| ||||| ||||||| |||| ||||| |||| ||||||||| |
|
|
| T |
39201762 |
acacctgaaattgtttccgcactagttagagcagaaagtggagaagaaa-ctcattcatatgatgaaatgtcataaataccct |
39201843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University