View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_28 (Length: 427)
Name: NF21213_low_28
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 29837908 - 29838311
Alignment:
| Q |
19 |
attgatgcatctgtgtcgtttgatttcatcttcaggtggttcaacgctcgctaatcttcttcaggctcttgaagattacttgccggttcttctaggatta |
118 |
Q |
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| T |
29837908 |
attgatgcatcggtgtcgtgtgatttcatcttcaggtggttcaacgctcgctaatcttcttcaggctcttgaagattacttgccggttcttctaggatta |
29838007 |
T |
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| Q |
119 |
gttaaagacggtatatcttgtgtttgttcgttagtacctcgatgtttaaaccatttacacaccatgcgcaccaaccacttgtgctagaccccggtgtttg |
218 |
Q |
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| T |
29838008 |
gttaaagacggtaaatcttgtgtttgttcgttagtacctcgatgtttaaaccatttacacaccatgcgcaccaaccacttgtgctagaccccggtgtttg |
29838107 |
T |
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| Q |
219 |
atgtatgctctctgtaagacaaagtactgattattattacttatctttatggtgtaggaagtcatttacaatacaaagtacagtttgtttggatgaacca |
318 |
Q |
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| T |
29838108 |
atgtatgctctctgtaagacaaaatactgattattattacttatctttatggtgtaggaagtcatttacaatacaaagtacagtttgtttggatgaacca |
29838207 |
T |
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| Q |
319 |
agaagatgaaaaatatgtaccttctaaaattcatacatatttttgagcttaatttacttcctattgagaagaatgctgatcaatttgttccggttacttc |
418 |
Q |
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| T |
29838208 |
agaagatgaaaaagaggtaccttctaaaattcatacatatttttgagtttaatttacttcctatagagaagaatgctgatcaatttgttccggttacttt |
29838307 |
T |
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| Q |
419 |
tgtg |
422 |
Q |
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| T |
29838308 |
tgtg |
29838311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 34628626 - 34628535
Alignment:
| Q |
40 |
gatttcatcttcaggtggttcaacgctcgctaatcttcttcaggctcttgaagattacttgccggttcttctaggattagttaaagacggta |
131 |
Q |
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| T |
34628626 |
gatttcatcctcaggaggttcaacactggctgatcttctacaggctcttgaagactacttaccggtacttttgggattagtcaaagatggta |
34628535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 34628451 - 34628400
Alignment:
| Q |
277 |
aagtcatttacaatacaaagtacagtttgtttggatgaaccaagaagatgaa |
328 |
Q |
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| T |
34628451 |
aagtcatttacaatacaaagtacaatttgtttggatgaatcaggaggatgaa |
34628400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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