View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21213_low_3 (Length: 708)

Name: NF21213_low_3
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21213_low_3
NF21213_low_3
[»] chr4 (12 HSPs)
chr4 (142-689)||(32588138-32588701)
chr4 (591-689)||(40952382-40952480)
chr4 (594-685)||(21113030-21113121)
chr4 (610-685)||(50686043-50686118)
chr4 (5-47)||(32588796-32588838)
chr4 (613-689)||(5816569-5816645)
chr4 (649-689)||(45186516-45186556)
chr4 (597-656)||(7215547-7215606)
chr4 (577-644)||(38539472-38539539)
chr4 (604-662)||(18423913-18423971)
chr4 (615-685)||(47786967-47787037)
chr4 (605-685)||(24448687-24448767)
[»] chr3 (9 HSPs)
chr3 (594-689)||(50745000-50745095)
chr3 (594-663)||(29389338-29389407)
chr3 (613-689)||(47334672-47334748)
chr3 (589-653)||(50466819-50466883)
chr3 (594-685)||(10872710-10872801)
chr3 (590-689)||(51060670-51060769)
chr3 (590-642)||(24596898-24596950)
chr3 (589-689)||(45736721-45736821)
chr3 (574-657)||(49412275-49412359)
[»] chr7 (5 HSPs)
chr7 (577-657)||(43130227-43130307)
chr7 (596-659)||(39960302-39960365)
chr7 (590-689)||(16871973-16872071)
chr7 (594-657)||(24280887-24280950)
chr7 (592-676)||(45531958-45532042)
[»] chr5 (5 HSPs)
chr5 (589-676)||(31706006-31706093)
chr5 (589-651)||(32398075-32398137)
chr5 (589-689)||(31691293-31691393)
chr5 (615-663)||(7336387-7336435)
chr5 (594-653)||(15062355-15062415)
[»] chr1 (5 HSPs)
chr1 (583-689)||(18607119-18607225)
chr1 (595-689)||(33765799-33765893)
chr1 (594-669)||(43738659-43738734)
chr1 (588-624)||(183975-184011)
chr1 (589-689)||(50550125-50550225)
[»] chr8 (3 HSPs)
chr8 (594-686)||(2805850-2805942)
chr8 (589-657)||(9015882-9015950)
chr8 (605-685)||(35874487-35874567)
[»] chr2 (6 HSPs)
chr2 (614-689)||(11726526-11726601)
chr2 (587-662)||(13304475-13304550)
chr2 (611-666)||(15861716-15861771)
chr2 (612-657)||(32218642-32218687)
chr2 (579-644)||(40590937-40591002)
chr2 (589-657)||(10996252-10996320)
[»] chr6 (1 HSPs)
chr6 (590-689)||(5571555-5571655)


Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 142 - 689
Target Start/End: Complemental strand, 32588701 - 32588138
Alignment:
Q  142 atgtttatgcgtgtttgtgagggaattttaaaacggatatagtagcatatgtaagacgacttggttgggacaagatggggtgactaattgttccatttta 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32588701 atgtttatgcgtgtttgtgagggaattttaaaacggatatagtagcatatgtaagacgacttggttgggacaagatggggtgactaattgttccatttta 32588602  T
Q  242 ttgaacctacctttcgttatctttgtattgacacttttattattttctgcgatatcatccaaaggaaatcaatttttctgtttgcagaatatgataatgt 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32588601 ttgaacctacctttcgttatctttgtattgacacttttattattttctgcgatatcatacaaaggaaatcaatttttctgtttgcagaatatgataatgt 32588502  T
Q  342 aggttccactagagttaaaggttttaaggtggtccttgcatgggagaggtataattagttgtttgattccacgaaagtgacacaattcacgtaacacctt 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32588501 aggttccactagagttaaaggttttaaggtggtccttgcatgggagaggtataattagttgtttgattccacgaaagtgacacaattcacgtaacacctt 32588402  T
Q  442 tattttcttcacaaagttacgggtaattaactaggttcgcctattctaagaaggtgtaataatattctgtactaaaataggagttatatttagacttttt 541  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  32588401 tattttcttcacaaagttacgggtaattaactaggttcgcctattctaagaaggtgtaataataatctgtactaaaataagagttatatttagacttttt 32588302  T
Q  542 gttaactttaaagacata----------------aaattatgcgcgaaaaaatacacctttcaatcattattataaataaaaagttatattttaaattcg 625  Q
    ||||||||||||||  ||                ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  32588301 gttaactttaaagatctaatgagagaagacttggaaattatgcgcgaaaaaatacacctttcagtcattattataaacaaaaagttatattttaaattcg 32588202  T
Q  626 ttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaatctaa 689  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32588201 ttcaatcaacgatgtatataatttttattataaatcaagtatataatttaacaaatgaatctaa 32588138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 689
Target Start/End: Complemental strand, 40952480 - 40952382
Alignment:
Q  591 cattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaatctaa 689  Q
    |||||||||||  ||||| |||||||||| |||| |||||| ||  |||||||| |||||||||||| | ||| ||||| ||||||  |||||||||||    
T  40952480 cattattataagcaaaaatttatattttagattcattcaattaaatatgtatatgatttttattatagaccacatatatcatttaatgaatgaatctaa 40952382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 594 - 685
Target Start/End: Complemental strand, 21113121 - 21113030
Alignment:
Q  594 tattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaat 685  Q
    ||||||||| |||||  || |||||| ||||||| ||| || ||||||||| |||||||||||| | ||| ||||| |||||| ||||||||    
T  21113121 tattataaacaaaaatctacattttatattcgtttaattaatgatgtatattatttttattatataccacatatattatttaataaatgaat 21113030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 685
Target Start/End: Complemental strand, 50686118 - 50686043
Alignment:
Q  610 ttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaat 685  Q
    |||||||||| |||| |||||| |||||||||||| || ||||||||| ||||| || || |||||| ||||||||    
T  50686118 ttatattttagattcattcaattaacgatgtatatgatctttattatagatcacatacattatttaataaatgaat 50686043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 32588838 - 32588796
Alignment:
Q  5 ggtgggtagattatacttcaggaatcaaactatcacattaatg 47  Q
    ||||| || ||||||||||||||||||||||||||||||||||    
T  32588838 ggtggataaattatacttcaggaatcaaactatcacattaatg 32588796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 613 - 689
Target Start/End: Original strand, 5816569 - 5816645
Alignment:
Q  613 tattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaatctaa 689  Q
    |||||||||||| || ||| || ||||||||| || ||||||||| ||||| ||||| ||||||  |||||||||||    
T  5816569 tattttaaattcatttaattaatgatgtatatgatctttattatagatcacatatatcatttaatgaatgaatctaa 5816645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 649 - 689
Target Start/End: Original strand, 45186516 - 45186556
Alignment:
Q  649 tttattataaatcacgtatataatttaacaaatgaatctaa 689  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  45186516 tttattataaatcatgtatatgatttaacaaatgaatctaa 45186556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 656
Target Start/End: Complemental strand, 7215606 - 7215547
Alignment:
Q  597 tataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattat 656  Q
    |||||| ||||| |||||||||||||||||||||| || |||| |||| || ||||||||    
T  7215606 tataaacaaaaatttatattttaaattcgttcaattaatgatgcatatgatctttattat 7215547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 644
Target Start/End: Original strand, 38539472 - 38539539
Alignment:
Q  577 atacacctttcaatcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatat 644  Q
    ||||||||| |||||| ||||||||  ||||| ||||||||||||||  |||||| || |||||||||    
T  38539472 atacaccttccaatcactattataagcaaaaatttatattttaaatttattcaataaatgatgtatat 38539539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 604 - 662
Target Start/End: Original strand, 18423913 - 18423971
Alignment:
Q  604 aaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatca 662  Q
    ||||| |||||||||| |||| |||||| || ||||||||| || ||||||||||||||    
T  18423913 aaaaatttatattttagattcattcaattaatgatgtatatgatctttattataaatca 18423971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 615 - 685
Target Start/End: Original strand, 47786967 - 47787037
Alignment:
Q  615 ttttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaat 685  Q
    |||||||||| |||||| |||||||||||||||  |||||||||| ||  ||||| ||||||  |||||||    
T  47786967 ttttaaattcattcaattaacgatgtatataatcgttattataaaccatatatatcatttaatgaatgaat 47787037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 685
Target Start/End: Original strand, 24448687 - 24448767
Alignment:
Q  605 aaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaat 685  Q
    |||| |||||||||| |||| || ||| || |||||||||| | ||||||||||||||| || || ||||||  |||||||    
T  24448687 aaaatttatattttatattcatttaattaatgatgtatatagtctttattataaatcacatacatcatttaattaatgaat 24448767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 594 - 689
Target Start/End: Complemental strand, 50745095 - 50745000
Alignment:
Q  594 tattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaatctaa 689  Q
    ||||||||||||||| ||| |||||| ||||||| ||| || |||||||||| | ||||||||||||||| || || |||||| |||| |||||||    
T  50745095 tattataaataaaaatttacattttatattcgtttaattaatgatgtatatagtatttattataaatcacatacatcatttaataaataaatctaa 50745000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 663
Target Start/End: Original strand, 29389338 - 29389407
Alignment:
Q  594 tattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcac 663  Q
    ||||||||  ||||| |||||||||| ||||||||||| || ||||||||| || ||||||||| |||||    
T  29389338 tattataagcaaaaatttatattttagattcgttcaattaatgatgtatatgatctttattatagatcac 29389407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 613 - 689
Target Start/End: Original strand, 47334672 - 47334748
Alignment:
Q  613 tattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaatctaa 689  Q
    |||||||||||| |||||| || ||||||||| |||||||||||| ||||  || || ||||||  |||||||||||    
T  47334672 tattttaaattcattcaattaatgatgtatatgatttttattatagatcatatacatcatttaatgaatgaatctaa 47334748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 653
Target Start/End: Original strand, 50466819 - 50466883
Alignment:
Q  589 atcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttat 653  Q
    ||||||||||||| |||||| |||||||||| |||| |||||| || ||||||||| || |||||    
T  50466819 atcattattataagtaaaaatttatattttagattcattcaattaatgatgtatatgatctttat 50466883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 685
Target Start/End: Complemental strand, 10872801 - 10872710
Alignment:
Q  594 tattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaat 685  Q
    ||||||||  ||||| |||||||||| |||| |||||| || |||||||||  | ||||||||||||||| || || ||||||  |||||||    
T  10872801 tattataagcaaaaatttatattttagattcattcaattaatgatgtatatggtctttattataaatcacatacatcatttaatgaatgaat 10872710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 689
Target Start/End: Original strand, 51060670 - 51060769
Alignment:
Q  590 tcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaatctaa 689  Q
    ||||||||||||  ||||| ||| |||||| |||  |||||| ||  |||||||| || ||||||||| |||||||| || |||||| |||| |||||||    
T  51060670 tcattattataagcaaaaatttacattttagattaattcaattaataatgtatatgatctttattatatatcacgtacatcatttaataaattaatctaa 51060769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 642
Target Start/End: Original strand, 24596898 - 24596950
Alignment:
Q  590 tcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtat 642  Q
    |||||||||||| |||||| ||| |||||| |||| |||||| ||||||||||    
T  24596898 tcattattataagtaaaaatttacattttagattcattcaataaacgatgtat 24596950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 589 - 689
Target Start/End: Complemental strand, 45736821 - 45736721
Alignment:
Q  589 atcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaatcta 688  Q
    |||| ||||||||  ||||  ||||||||||||||| |||||| || |||||| || || ||||||||| | ||| || || ||||||  ||||||||||    
T  45736821 atcactattataagcaaaattttatattttaaattcattcaattaatgatgtacatgatctttattatagaccacatacatcatttaatgaatgaatcta 45736722  T
Q  689 a 689  Q
    |    
T  45736721 a 45736721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 574 - 657
Target Start/End: Original strand, 49412275 - 49412359
Alignment:
Q  574 aaaatacacctttcaatcattattataaataaaaa-gttatattttaaattcgttcaatcaacgatgtatataatttttattata 657  Q
    |||||||||| | |||||||||||||||  |||||  ||||||||||| ||  |||||| || |||||| ||||| |||||||||    
T  49412275 aaaatacaccctccaatcattattataagcaaaaaccttatattttaagtttattcaattaatgatgtacataatctttattata 49412359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 577 - 657
Target Start/End: Original strand, 43130227 - 43130307
Alignment:
Q  577 atacacctttcaatcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattata 657  Q
    |||||| || ||||||||||||||||||||||  ||  ||||| |||| |||||| || ||||||||||||||||||||||    
T  43130227 atacactttccaatcattattataaataaaaatctacgttttagattcattcaattaatgatgtatataatttttattata 43130307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 596 - 659
Target Start/End: Complemental strand, 39960365 - 39960302
Alignment:
Q  596 ttataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaa 659  Q
    ||||||||||||| ||||||||||||||| |||||| || ||| ||| || |||||||||||||    
T  39960365 ttataaataaaaatttatattttaaattcattcaattaatgatatatgtagtttttattataaa 39960302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 689
Target Start/End: Complemental strand, 16872071 - 16871973
Alignment:
Q  590 tcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaatctaa 689  Q
    |||||||||||| |||||| || ||||| | |||| || ||| ||  ||||||||||| ||||||||||||||| || || || ||| ||||||||||||    
T  16872071 tcattattataagtaaaaatttgtattt-agattcatttaattaattatgtatataatatttattataaatcacataaatcatgtaataaatgaatctaa 16871973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 657
Target Start/End: Complemental strand, 24280950 - 24280887
Alignment:
Q  594 tattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattata 657  Q
    |||||||| ||||||  || ||||||||||| |||||| || |||||||||||| |||||||||    
T  24280950 tattataagtaaaaatctacattttaaattcattcaattaatgatgtatataatatttattata 24280887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 592 - 676
Target Start/End: Original strand, 45531958 - 45532042
Alignment:
Q  592 attattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaa 676  Q
    ||||||||||||||||| |||||||||| |||  || ||| |   ||||||||| ||||||||||| | ||| ||||| ||||||    
T  45531958 attattataaataaaaatttatattttagattaatttaattactaatgtatatagtttttattatacaccacatatatcatttaa 45532042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 589 - 676
Target Start/End: Complemental strand, 31706093 - 31706006
Alignment:
Q  589 atcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaa 676  Q
    ||||||||||||| |||||| ||| ||||||||||| || ||| ||  ||||||||||||||||||||| | ||| || |||||||||    
T  31706093 atcattattataagtaaaaatttacattttaaattcatttaattaataatgtatataatttttattatagaccacatacataatttaa 31706006  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 589 - 651
Target Start/End: Complemental strand, 32398137 - 32398075
Alignment:
Q  589 atcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataattttt 651  Q
    |||| ||||||||| |||||  |||||||||||||| |||||| || ||||||||||||||||    
T  32398137 atcactattataaacaaaaatctatattttaaattcattcaattaatgatgtatataattttt 32398075  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 689
Target Start/End: Complemental strand, 31691393 - 31691293
Alignment:
Q  589 atcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaatcta 688  Q
    |||| |||||||| |||||| |||||||| | |||| |||||| || |||||||||| | ||||||| | | ||| || |||||||||  ||||||||||    
T  31691393 atcactattataagtaaaaatttatatttgagattcattcaattaatgatgtatatattatttattacagaccacatacataatttaatgaatgaatcta 31691294  T
Q  689 a 689  Q
    |    
T  31691293 a 31691293  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 615 - 663
Target Start/End: Original strand, 7336387 - 7336435
Alignment:
Q  615 ttttaaattcgttcaatcaacgatgtatataatttttattataaatcac 663  Q
    |||||||||| || ||| || |||||||||||||||||||||| |||||    
T  7336387 ttttaaattcatttaatgaatgatgtatataatttttattatatatcac 7336435  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 653
Target Start/End: Complemental strand, 15062415 - 15062355
Alignment:
Q  594 tattataaa-taaaaagttatattttaaattcgttcaatcaacgatgtatataatttttat 653  Q
    ||||||||| || ||||||||||||||||||| |||| | || |||||||||| |||||||    
T  15062415 tattataaagtataaagttatattttaaattcattcatttaatgatgtatatagtttttat 15062355  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 689
Target Start/End: Complemental strand, 18607225 - 18607119
Alignment:
Q  583 ctttcaatcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatg 682  Q
    ||||| |||| ||||||||| |||||  |||||||||||||| |||||| ||  || |||||||||||||||||||  |||||| || ||||||  |||     
T  18607225 ctttcgatcactattataaacaaaaatctatattttaaattcattcaattaataatatatataatttttattataatccacgtacattatttaatgaata 18607126  T
Q  683 aatctaa 689  Q
    |||||||    
T  18607125 aatctaa 18607119  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 595 - 689
Target Start/End: Original strand, 33765799 - 33765893
Alignment:
Q  595 attataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaatctaa 689  Q
    ||||||| |||||| |||||||||||||||||| ||| || |||||||||  | ||||||||| | ||| || || |||||| ||||||||||||    
T  33765799 attataagtaaaaatttatattttaaattcgtttaattaatgatgtatatggtctttattatagaccacatacatcatttaataaatgaatctaa 33765893  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 594 - 669
Target Start/End: Complemental strand, 43738734 - 43738659
Alignment:
Q  594 tattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatat 669  Q
    ||||||| ||||||| | |||||||| |||| || ||| || ||||||||| |||||||||||||||||| |||||    
T  43738734 tattatagataaaaattaatattttatattcatttaattaatgatgtatatgatttttattataaatcacatatat 43738659  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 624
Target Start/End: Complemental strand, 184011 - 183975
Alignment:
Q  588 aatcattattataaataaaaagttatattttaaattc 624  Q
    ||||||||||||||||||||| | |||||||||||||    
T  184011 aatcattattataaataaaaaataatattttaaattc 183975  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 589 - 689
Target Start/End: Original strand, 50550125 - 50550225
Alignment:
Q  589 atcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaatcta 688  Q
    |||| |||||||||||||||   | ||| ||||||| |||||| ||  |||||||| || ||||||||| ||||| || || ||||||  ||||||||||    
T  50550125 atcactattataaataaaaatcaacattataaattcattcaattaataatgtatatgatctttattatagatcacatacatcatttaatgaatgaatcta 50550224  T
Q  689 a 689  Q
    |    
T  50550225 a 50550225  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 686
Target Start/End: Complemental strand, 2805942 - 2805850
Alignment:
Q  594 tattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaatc 686  Q
    ||||||||||||||  ||| ||||||||||| |||||| ||  |||||||| || ||||||||| | ||| ||||| |||||| |||||||||    
T  2805942 tattataaataaaattttacattttaaattcattcaattaataatgtatatgatctttattatagaccacatatatcatttaataaatgaatc 2805850  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 657
Target Start/End: Complemental strand, 9015950 - 9015882
Alignment:
Q  589 atcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattata 657  Q
    ||||||||||||| ||||||  ||||||||| |||| |||||| || ||||||||| || |||||||||    
T  9015950 atcattattataagtaaaaatctatattttagattcattcaattaatgatgtatatgatctttattata 9015882  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 685
Target Start/End: Original strand, 35874487 - 35874567
Alignment:
Q  605 aaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaat 685  Q
    |||| |||||||||| |||| || ||| || |||||||||| | ||||||||||||||| || || ||||||  |||||||    
T  35874487 aaaatttatattttatattcatttaattaatgatgtatatagtctttattataaatcacatacatcatttaattaatgaat 35874567  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 689
Target Start/End: Original strand, 11726526 - 11726601
Alignment:
Q  614 attttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaatctaa 689  Q
    |||||| |||| ||||||||| |||||||||||| ||||||||  ||||| || || ||||||  |||||||||||    
T  11726526 attttagattcattcaatcaatgatgtatataatctttattatggatcacatacatcatttaatgaatgaatctaa 11726601  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 662
Target Start/End: Original strand, 13304475 - 13304550
Alignment:
Q  587 caatcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattataaatca 662  Q
    |||| ||||||||||||||||| |||||||||| |||| ||||||     ||||||||||| ||||||||| ||||    
T  13304475 caattattattataaataaaaatttatattttagattctttcaattttttatgtatataatctttattatatatca 13304550  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 666
Target Start/End: Complemental strand, 15861771 - 15861716
Alignment:
Q  611 tatattttaaattcgttcaatcaacgatgtatataatttttattataaatcacgta 666  Q
    ||||||||| ||||||||||| ||  ||||||||||| ||||||||| ||||||||    
T  15861771 tatattttagattcgttcaattaattatgtatataatctttattatagatcacgta 15861716  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 657
Target Start/End: Complemental strand, 32218687 - 32218642
Alignment:
Q  612 atattttaaattcgttcaatcaacgatgtatataatttttattata 657  Q
    |||||||| |||| |||||| || ||||||||||||||||||||||    
T  32218687 atattttagattcattcaattaatgatgtatataatttttattata 32218642  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 644
Target Start/End: Original strand, 40590937 - 40591002
Alignment:
Q  579 acacctttcaatcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatat 644  Q
    |||| |||| ||||| |||||||||||||| | ||||||||||||| |||||| || ||| |||||    
T  40590937 acacttttcgatcatcattataaataaaaattaatattttaaattcattcaattaatgatatatat 40591002  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 589 - 657
Target Start/End: Original strand, 10996252 - 10996320
Alignment:
Q  589 atcattattataaataaaaagttatattttaaattcgttcaatcaacgatgtatataatttttattata 657  Q
    |||||||||||||  ||||| ||||||||||||||| || ||| || |||||||||  | |||||||||    
T  10996252 atcattattataagcaaaaatttatattttaaattcattgaattaatgatgtatatggtctttattata 10996320  T

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Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 689
Target Start/End: Complemental strand, 5571655 - 5571555
Alignment:
Q  590 tcattattataaataaaaagttat-attttaaattcgttcaatcaacgatgtatataatttttattataaatcacgtatataatttaacaaatgaatcta 688  Q
    |||||||||||| |||||| || | |||||| |||  ||||||||| ||||||||| |  ||||||| | | ||| ||||| |||||| |||||||||||    
T  5571655 tcattattataattaaaaactttttattttagattaattcaatcaatgatgtatatgacctttattacagaccacatatatcatttaataaatgaatcta 5571556  T
Q  689 a 689  Q
    |    
T  5571555 a 5571555  T

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