View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21213_low_30 (Length: 393)

Name: NF21213_low_30
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21213_low_30
NF21213_low_30
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-292)||(230787-231076)


Alignment Details
Target: scaffold0006 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 230787 - 231076
Alignment:
Q  1 atgctcaaatttgtggacctcctgttctggaaattttgtgttgccaatatcgtcaaacttaacaattccgttaagtcttaaataaaaaatccattaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||||    
T  230787 atgctcaaatttgtggacctcctgttctggaaattttgtgttgtcaatatcgtcaaacttaacaattctgttaagtctttaaaaaaaaatccattaaatt 230886  T
Q  101 ttaaacaactgtgcaagggaacatttttgttcgaaagagctgtgcaagggaacatcaaatgtttataattctagtttttatcatcaactccaatggaaca 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |    
T  230887 ttaaacaactgtgcaaggtaacatttttgttcgaaagagctgtgcaagggaacatcaaatgtctataattcttgtttttatcttcaactccaatggaata 230986  T
Q  201 atgaataaagaggtacacatgaaggtaaaattcatatggttttctttataaatgaagaggtacacaaacaggatgatgatcttgcttccaat 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||  |||||| |||||||||||    
T  230987 atgaataaagaggtacacatgaaggtaaaattcatatggttttctttataaatgaagaggtagacgaacagg--gatgatgttgcttccaat 231076  T

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