View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21213_low_32 (Length: 385)

Name: NF21213_low_32
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21213_low_32
NF21213_low_32
[»] chr5 (16 HSPs)
chr5 (5-272)||(8026400-8026669)
chr5 (68-253)||(20524531-20524715)
chr5 (68-253)||(10719742-10719927)
chr5 (67-253)||(2976378-2976556)
chr5 (166-253)||(23145929-23146016)
chr5 (92-253)||(37872129-37872291)
chr5 (175-253)||(16778239-16778317)
chr5 (68-116)||(33758790-33758838)
chr5 (162-253)||(3454338-3454431)
chr5 (195-255)||(20654459-20654519)
chr5 (162-253)||(36442612-36442702)
chr5 (68-150)||(36442080-36442160)
chr5 (67-116)||(2467000-2467049)
chr5 (195-240)||(16778144-16778189)
chr5 (72-109)||(37872302-37872339)
chr5 (72-116)||(21239431-21239475)
[»] chr7 (10 HSPs)
chr7 (68-253)||(34998524-34998709)
chr7 (83-253)||(46023139-46023309)
chr7 (69-253)||(45627340-45627527)
chr7 (162-253)||(30783412-30783504)
chr7 (183-253)||(32677054-32677124)
chr7 (69-152)||(39187987-39188068)
chr7 (162-250)||(46910236-46910324)
chr7 (162-236)||(15878695-15878770)
chr7 (72-253)||(8541431-8541609)
chr7 (77-152)||(32676800-32676873)
[»] chr8 (12 HSPs)
chr8 (67-253)||(30208194-30208379)
chr8 (68-254)||(40719820-40720009)
chr8 (72-253)||(39401955-39402136)
chr8 (175-252)||(31333091-31333169)
chr8 (72-216)||(42056680-42056821)
chr8 (162-253)||(1162045-1162137)
chr8 (67-253)||(35179155-35179338)
chr8 (175-253)||(36132775-36132854)
chr8 (162-252)||(5594871-5594962)
chr8 (195-253)||(34514567-34514625)
chr8 (72-152)||(16782415-16782495)
chr8 (195-255)||(34173545-34173605)
[»] chr4 (10 HSPs)
chr4 (71-253)||(39503432-39503616)
chr4 (68-251)||(20679770-20679955)
chr4 (62-262)||(47541728-47541928)
chr4 (71-253)||(17056614-17056793)
chr4 (72-253)||(46550632-46550813)
chr4 (69-222)||(52920047-52920200)
chr4 (162-254)||(41464730-41464822)
chr4 (162-254)||(47732415-47732509)
chr4 (199-253)||(36364605-36364659)
chr4 (80-148)||(36364897-36364963)
[»] chr2 (17 HSPs)
chr2 (68-250)||(6512016-6512195)
chr2 (68-253)||(30706078-30706263)
chr2 (68-253)||(37721445-37721629)
chr2 (162-254)||(34480054-34480148)
chr2 (68-255)||(3870020-3870210)
chr2 (72-253)||(36400857-36401036)
chr2 (162-250)||(3949249-3949337)
chr2 (174-253)||(4848117-4848194)
chr2 (66-116)||(28734133-28734183)
chr2 (68-152)||(3647414-3647497)
chr2 (68-152)||(11028775-11028857)
chr2 (68-254)||(38879513-38879698)
chr2 (190-240)||(29685519-29685569)
chr2 (198-250)||(28733717-28733769)
chr2 (72-131)||(9008979-9009038)
chr2 (195-253)||(9009105-9009163)
chr2 (68-128)||(29685522-29685582)
[»] chr1 (15 HSPs)
chr1 (69-253)||(16253026-16253210)
chr1 (69-253)||(41942778-41942960)
chr1 (68-253)||(24241474-24241658)
chr1 (188-253)||(7101276-7101341)
chr1 (68-116)||(39744232-39744280)
chr1 (68-152)||(21356790-21356872)
chr1 (68-112)||(2344965-2345009)
chr1 (183-249)||(26764608-26764674)
chr1 (162-253)||(8971517-8971609)
chr1 (68-128)||(34773472-34773532)
chr1 (68-116)||(48503918-48503966)
chr1 (162-253)||(48506767-48506859)
chr1 (68-152)||(7101382-7101468)
chr1 (66-125)||(41725482-41725541)
chr1 (192-253)||(34773347-34773408)
[»] chr6 (5 HSPs)
chr6 (67-253)||(7080148-7080334)
chr6 (68-152)||(25336944-25337027)
chr6 (195-253)||(994870-994928)
chr6 (203-250)||(2141175-2141222)
chr6 (195-254)||(26606213-26606272)
[»] scaffold1339 (1 HSPs)
scaffold1339 (68-152)||(85-169)
[»] scaffold0095 (1 HSPs)
scaffold0095 (72-253)||(35366-35547)
[»] chr3 (14 HSPs)
chr3 (68-253)||(45805455-45805644)
chr3 (68-253)||(26466257-26466442)
chr3 (69-251)||(47169243-47169429)
chr3 (174-253)||(39170905-39170983)
chr3 (68-253)||(2008395-2008580)
chr3 (68-253)||(22220206-22220389)
chr3 (162-252)||(22831103-22831194)
chr3 (203-253)||(25199073-25199123)
chr3 (183-253)||(39056803-39056873)
chr3 (196-253)||(1994781-1994838)
chr3 (162-249)||(14785016-14785099)
chr3 (71-116)||(44880253-44880298)
chr3 (72-114)||(1994915-1994957)
chr3 (71-116)||(39056937-39056982)
[»] scaffold0009 (2 HSPs)
scaffold0009 (179-255)||(25945-26019)
scaffold0009 (65-116)||(25681-25732)
[»] scaffold0288 (2 HSPs)
scaffold0288 (183-253)||(17977-18048)
scaffold0288 (68-116)||(18119-18167)
[»] scaffold0830 (1 HSPs)
scaffold0830 (97-152)||(5407-5462)
[»] scaffold0289 (1 HSPs)
scaffold0289 (181-252)||(12372-12443)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 272
Target Start/End: Original strand, 8026400 - 8026669
Alignment:
Q  5 caatataataataggataaaatatccaatcatcgaggaaaaatatgaaatctcattttagaaggaggtattcttccatggtcacaagaccaaatcaatac 104  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||    
T  8026400 caatataataataagataaaatatccaatcatcgaggaaaaatatgaaatctcactttagaaggaggtattcttctatagtcacaagaccaaatcaatac 8026499  T
Q  105 tgtttggacacatatacataaaaatatggtctgtaaaatattcaatca--nnnnnnnnnatcaatttcttctttattattaaaatatatttctttatgtg 202  Q
    ||||||||| |||| ||||||||| ||||||| |||||||||||||||           ||||||||| ||||||||| ||||||||||||||| ||||     
T  8026500 tgtttggacgcatacacataaaaagatggtctttaaaatattcaatcatttttttttatatcaatttcctctttattactaaaatatatttcttcatgta 8026599  T
Q  203 tgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctcctttagaagagcttcttaa 272  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  8026600 tgtttgaccaaacaatttttatttgatcatgtgaccatattataatttctactttagaagagcttcttaa 8026669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 68 - 253
Target Start/End: Complemental strand, 20524715 - 20524531
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaat 167  Q
    |||||||||||||||| |||||| || |||||||||||||||||||||| |  ||| |||| ||| | | |||||||||||||||         ||||||    
T  20524715 gaggtattcttccatgatcacaaaactaaatcaatactgtttggacacaca--catcaaaagatgatgtttaaaatattcaatcatttttttt-atcaat 20524619  T
Q  168 ttcttctttattattaaaata--tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||| ||||||||||||||| |  |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  20524618 ttcctctttattattaaaaaaaatatttctttatgtgtgtgtgaccaaacactttttatttgatcatgtgatcatattagaatttctc 20524531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 253
Target Start/End: Original strand, 10719742 - 10719927
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaat 167  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||| |  |||||||| ||||||  |||||||||||||||         ||||||    
T  10719742 gaggtattcttccatggtcataagaccaaattaatagtgtttggacacaca--cataaaaaaatggtccttaaaatattcaatcatttttttttatcaat 10719839  T
Q  168 ttcttctttattattaaaata--tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||  |||||| |||||||| |  ||||||||||||||| |||||||||||| |||||||||| ||||||||||||| || ||||||||    
T  10719840 tttctctttactattaaaaaaaatatttctttatgtgtttgtgaccaaacactttttatttggtcatgtgaccataataaaatttctc 10719927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 67 - 253
Target Start/End: Complemental strand, 2976556 - 2976378
Alignment:
Q  67 ggaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaa 166  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||    ||||||||| ||||||  |||||||||||||||         |||||    
T  2976556 ggaggtattcttccatggtcataagaccaaatcaatagtgtttggacac----acataaaaagatggtccttaaaatattcaatca-ttttttttatcaa 2976462  T
Q  167 tttcttctttattatt-aaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||||||||||| |||| |||| | | || ||||  ||||||||||||||||   |||||||  |||||||||||||||||||||||||    
T  2976461 tttcttctttaatattaaaaaaaaaattattta--tgtgtgtgaccaaaca--ctttatttagtcatgtgaccatattagaatttctc 2976378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 23146016 - 23145929
Alignment:
Q  166 atttcttctttattattaaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||||||||||||||||||||| | | || ||||||||| |||||||||| | ||||| ||||||| | ||||||||||||||||||||    
T  23146016 atttcttctttattattaaaaaaaaattttttatgtgtatgtgaccaaatactttttctttgatcctatgaccatattagaatttctc 23145929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 253
Target Start/End: Complemental strand, 37872291 - 37872129
Alignment:
Q  92 accaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaatttcttctttattattaaaa-tata 190  Q
    |||||||||||| | |||||||||| | ||||||||| ||  ||   ||||||||||||||         ||||||||| || |||||||||||| ||||    
T  37872291 accaaatcaataatatttggacacacacacataaaaagattctcatcaaaatattcaatcatctttttttatcaatttcctccttattattaaaaatata 37872192  T
Q  191 tttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||| |||||||||||||||||||| | ||||| |||| || | ||| ||||||||||||||||    
T  37872191 tttttttatgtgtgtgtgaccaaatactttttctttggtcctctgatcatattagaatttctc 37872129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 16778239 - 16778317
Alignment:
Q  175 ttattattaaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||||||||||| |||||| ||||||||||| ||||||| || |||||||||| || |||| |||||||||||||||||    
T  16778239 ttattattaaaaaatatttttttatgtgtgtatgaccaagcactttttatttggtcctgtggccatattagaatttctc 16778317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 33758790 - 33758838
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacaca 116  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33758790 gaggtattcttccatggtcacaagatcaaatcaatactgtttggacaca 33758838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 253
Target Start/End: Original strand, 3454338 - 3454431
Alignment:
Q  162 atcaatttcttctttattattaaaata--tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||||||||||| ||||||||||||| |  ||||||||||| | ||||| |||||| | |||||  |||||||||||||||||||| ||||||||    
T  3454338 atcaatttcttttttattattaaaaaaaatatttctttatatatgtgtaaccaaatactttttccttgatcatgtgaccatattaaaatttctc 3454431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 20654519 - 20654459
Alignment:
Q  195 tttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctcct 255  Q
    ||||||||||| |||  ||||| |||||||||| |||||||||||||||||||||||||||    
T  20654519 tttatgtgtgtttgatgaaacactttttatttggtcatgtgaccatattagaatttctcct 20654459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 253
Target Start/End: Original strand, 36442612 - 36442702
Alignment:
Q  162 atcaatttcttctttattattaaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||||||||| ||||||||||||||| |   |||||| ||| |||||| | ||||| |||||||||| |||||||||||||||| ||||||||    
T  36442612 atcaatttcctctttattattaaaaaactattctttttgtttgtgtgtc-aaacactttttatttggtcatgtgaccatattaaaatttctc 36442702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 36442080 - 36442160
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaat 150  Q
    |||| ||||||||||| ||||||||||||||||||| || ||||  ||||| ||  ||||| ||||||| |||||||||||||    
T  36442080 gagggattcttccatgctcacaagaccaaatcaatagtgattgg--acataaacgcaaaaagatggtctttaaaatattcaat 36442160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 2467000 - 2467049
Alignment:
Q  67 ggaggtattcttccatggtcacaagaccaaatcaatactgtttggacaca 116  Q
    |||||||||||| |||||||| ||||||||||||||| | ||||||||||    
T  2467000 ggaggtattcttgcatggtcataagaccaaatcaatagtatttggacaca 2467049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 16778189 - 16778144
Alignment:
Q  195 tttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccat 240  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||    
T  16778189 tttatgtgtgtgtgaccaaacacttttcatttgatcctgtgaccat 16778144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 37872339 - 37872302
Alignment:
Q  72 tattcttccatggtcacaagaccaaatcaatactgttt 109  Q
    |||||||||||||||||||||||||||||||| |||||    
T  37872339 tattcttccatggtcacaagaccaaatcaataatgttt 37872302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 21239475 - 21239431
Alignment:
Q  72 tattcttccatggtcacaagaccaaatcaatactgtttggacaca 116  Q
    ||||||||||||||||||||||||||| |||| | ||||||||||    
T  21239475 tattcttccatggtcacaagaccaaataaatagtctttggacaca 21239431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 8e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 68 - 253
Target Start/End: Original strand, 34998524 - 34998709
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaat 167  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| | | ||||||| ||  ||   ||||||||||||||         ||||||    
T  34998524 gaggtattcttccatggtcacaagaccaaatcaataatgtttggacacacacatataaaaagattctcctcaaaatattcaatcattattttt-atcaat 34998622  T
Q  168 ttcttctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||  || |||||||||||| | |||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||    
T  34998623 tttctccttattattaaaaaaatatttctttatgtgtgtgtgaccaaatactttttctttgatcatgtgaccatattagaatttctc 34998709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 46023139 - 46023309
Alignment:
Q  83 ggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaatttcttctttattatt 182  Q
    ||||||||||||||||||||| |||||||||||| | ||||||||| ||||| | |||||||||||||||         ||||||||  | |||| ||||    
T  46023139 ggtcacaagaccaaatcaatattgtttggacacacacacataaaaagatggtttttaaaatattcaatcattttttt--atcaattttctttttactatt 46023236  T
Q  183 aaaata--tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||||||  |||||||||||| |||| |||||||||| |||||||||| |||| ||||||||||||||||||||    
T  46023237 aaaataaatatttctttatgcgtgtatgaccaaacattttttatttggtcatctgaccatattagaatttctc 46023309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 69 - 253
Target Start/End: Complemental strand, 45627527 - 45627340
Alignment:
Q  69 aggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaata-tggtctgtaaaatattcaatcannnnnnnnnatcaat 167  Q
    ||||||||||||||||||||| ||||||||||||| ||||| |||||| | ||||||||| | | |||  ||||||||| |||||         ||||||    
T  45627527 aggtattcttccatggtcacaggaccaaatcaatagtgttttgacacacacacataaaaaaaattgtccttaaaatatttaatcatttttttt-atcaat 45627429  T
Q  168 ttcttctttattattaaaata---tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||| | | ||||||||||| |   |||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||    
T  45627428 ttcctttatattattaaaaaaaaatatttctttatgtgtgtgtgaccaaacagtttttatttggtcatgtgaccattttagaatttctc 45627340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 162 - 253
Target Start/End: Complemental strand, 30783504 - 30783412
Alignment:
Q  162 atcaatttcttctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||    
T  30783504 atcaatttcctctttcttattaaaaaaatatttctttatgtgtgtgtgaccaaacactttttatttggtcatgtgaccattttagaatttctc 30783412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 32677054 - 32677124
Alignment:
Q  183 aaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32677054 aaaaaatatttctttatatgtgtgtgaccaaacattttttatttgatcatgtgaccatattagaatttctc 32677124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 39188068 - 39187987
Alignment:
Q  69 aggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatca 152  Q
    ||||||||||||||||||| ||||||||||||||| | |||||||||  |  |||||||| ||||||  |||||||||||||||    
T  39188068 aggtattcttccatggtcagaagaccaaatcaatagtatttggacac--acgcataaaaagatggtccttaaaatattcaatca 39187987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 46910324 - 46910236
Alignment:
Q  162 atcaatttcttctttattattaaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaattt 250  Q
    ||||||||| | ||||||||||||| |||||| ||||||||| ||||| |||||| ||||| |||  || ||||| |||||||||||||    
T  46910324 atcaatttcctttttattattaaaaaatatttttttatgtgtttgtgatcaaacactttttctttagtcttgtgatcatattagaattt 46910236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 15878770 - 15878695
Alignment:
Q  162 atcaatttcttctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtga 236  Q
    ||||||||  ||||||||||||||| | |||||||| || |||||||||||||||| |||||||||| ||||||||    
T  15878770 atcaatttagtctttattattaaaaaaatatttcttgatttgtgtgtgaccaaacactttttatttggtcatgtga 15878695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 253
Target Start/End: Original strand, 8541431 - 8541609
Alignment:
Q  72 tattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaatttct 171  Q
    |||||||  ||||||||||||||||||||||| |||||| ||||| |  | |||||| ||  ||   ||||||||||||||         |||||||||     
T  8541431 tattcttttatggtcacaagaccaaatcaataatgtttgaacacaca--cgtaaaaagattctcctcaaaatattcaatcattattttttatcaatttcc 8541528  T
Q  172 tctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    || |||||||||||| | || |||||||||||  |||||||||||| | ||| ||||||| | | ||||||||| ||||||||    
T  8541529 tccttattattaaaaaaatacttctttatgtg--tgtgaccaaacactatttctttgatcctataaccatattaaaatttctc 8541609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 32676800 - 32676873
Alignment:
Q  77 ttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatca 152  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||   |||||| ||||||  |||| ||||||||||    
T  32676800 ttccatggtcacaagaccaaatcaatagtgtttggatacacat--gtaaaaagatggtccctaaactattcaatca 32676873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 67 - 253
Target Start/End: Original strand, 30208194 - 30208379
Alignment:
Q  67 ggaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaa 166  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||  ||  | |||||||||||||         |||||    
T  30208194 ggaggtattcttccatggtcataagaccaaatcaataatgtttggacacatatacataaaaagattctc-ctcaaatattcaatca-tcttttttatcaa 30208291  T
Q  167 tttcttctttattatt-aaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||| || |||||||| |||| | | ||||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||    
T  30208292 tttcctccttattattaaaaaaacacttctttatgtgtgtgtgaccaaacactttttctttggtcctgtgaccatattagaatttctc 30208379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 254
Target Start/End: Complemental strand, 40720009 - 40719820
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaat 167  Q
    |||||||||||||||||||| ||||  |||| |||| |||||||||||| | ||||||||| ||  ||   ||||||||||||||         ||||||    
T  40720009 gaggtattcttccatggtcaaaagattaaattaataatgtttggacacacacacataaaaagattctcctcaaaatattcaatcatctttttttatcaat 40719910  T
Q  168 ttcttctttattatt-aaaatatatttctttatgtgtgt--gtgaccaaacaatttttatttgatcatgtgaccatattagaatttctcc 254  Q
    ||| || |||||||| |||| ||| ||||||||||||||  ||||||||||| ||||| |||| ||||| ||||||||||||||||||||    
T  40719909 ttcctccttattatttaaaaaatacttctttatgtgtgtatgtgaccaaacactttttctttggtcatgcgaccatattagaatttctcc 40719820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 253
Target Start/End: Complemental strand, 39402136 - 39401955
Alignment:
Q  72 tattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaatttct 171  Q
    |||||||||||||||||||||||||||||||| | |||| ||| | ||||||||||| ||  ||   ||||||||||||||         ||||||||||    
T  39402136 tattcttccatggtcacaagaccaaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaatttct 39402037  T
Q  172 tctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |  |||||||||||| | ||||| ||| | || ||||||||||||| ||||| |||||||||||||| |||||| ||||||||    
T  39402036 ttcttattattaaaaaaatattttttt-tatgcgtgtgaccaaacactttttctttgatcatgtgacgatattaaaatttctc 39401955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 31333169 - 31333091
Alignment:
Q  175 ttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttct 252  Q
    |||||||||||| | |||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||    
T  31333169 ttattattaaaaaaatatttctttatgtgtgtgtgaccaaacactatttctttgatcatgtgaccatattagaatttct 31333091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 72 - 216
Target Start/End: Original strand, 42056680 - 42056821
Alignment:
Q  72 tattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaatttct 171  Q
    |||||||||||||||||||||||||||||||| |||||||||||  | ||||||||| ||  ||| |||||||||||||||         ||||||||      
T  42056680 tattcttccatggtcacaagaccaaatcaataatgtttggacac--aaacataaaaagattctctttaaaatattcaatca-tcttttttatcaattttc 42056776  T
Q  172 tctttattattaaaatatatttctttatgtgtgtgtgaccaaaca 216  Q
    || |||||||||||| |||||||||||||||| |||| |||||||    
T  42056777 tccttattattaaaaaatatttctttatgtgtatgtggccaaaca 42056821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 162 - 253
Target Start/End: Complemental strand, 1162137 - 1162045
Alignment:
Q  162 atcaatttcttctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||  || | ||||||||| ||||||||||    
T  1162137 atcaatttcctctttattattaaaaaaatatttctttatgtgtgtgtgaccaaacactttttctttagtcctatgaccatataagaatttctc 1162045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 253
Target Start/End: Original strand, 35179155 - 35179338
Alignment:
Q  67 ggaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaa 166  Q
    |||||||||||| |||||||| ||||||||||||||| |||||||||||| ||  ||||||| ||  |    |||||||||||| |         |||||    
T  35179155 ggaggtattctttcatggtcataagaccaaatcaataatgtttggacacacat--ataaaaagattcttctcaaaatattcaataatttttttttatcaa 35179252  T
Q  167 tttcttctttattatt-aaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||| |  |||||||| |||| ||| ||||||||| ||||||||||||||| ||||| |||||||   ||||||||||||||||||||    
T  35179253 tttccttcttattattaaaaaaatacttctttatgcgtgtgtgaccaaacactttttctttgatc--ctgaccatattagaatttctc 35179338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 36132775 - 36132854
Alignment:
Q  175 ttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||||||||||| | ||||||||||||||||| | |||||||| ||||||||||  ||| ||||||||||||||||||||    
T  36132775 ttattattaaaaaaatatttctttatgtgtgtataaccaaacactttttatttggccatatgaccatattagaatttctc 36132854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 5594871 - 5594962
Alignment:
Q  162 atcaatttcttctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttct 252  Q
    |||| |||| || |||||||||||| | || |||||||| |||||||||| ||||| ||||| ||||||| ||||||||||||| |||||||    
T  5594871 atcactttcctccttattattaaaaaaatacttctttatatgtgtgtgactaaacactttttctttgatcctgtgaccatattaaaatttct 5594962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 34514567 - 34514625
Alignment:
Q  195 tttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||||||||||||||||||||| | ||| |||| || |||||| |||||| ||||||||    
T  34514567 tttatgtgtgtgtgaccaaacactatttgtttggtcttgtgactatattaaaatttctc 34514625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 16782495 - 16782415
Alignment:
Q  72 tattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatca 152  Q
    |||||||  |||||||||||||||||| |||| | |||||||| | | ||||||| ||||  ||| |||||||||| ||||    
T  16782495 tattcttttatggtcacaagaccaaataaatagtctttggacatacacacataaagatattatctttaaaatattcgatca 16782415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 34173545 - 34173605
Alignment:
Q  195 tttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctcct 255  Q
    ||||| |||||||||||||||| ||||| |||  || ||||||||| ||| ||||||||||    
T  34173545 tttatatgtgtgtgaccaaacactttttgtttagtcttgtgaccatgttaaaatttctcct 34173605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 71 - 253
Target Start/End: Complemental strand, 39503616 - 39503432
Alignment:
Q  71 gtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnn-atcaattt 169  Q
    ||||||||| ||||||||||||| ||||||||| |||||| ||||||| ||||||||| ||| ||| ||||||||| |||            ||||||||    
T  39503616 gtattcttctatggtcacaagactaaatcaatagtgtttgaacacatacacataaaaagatgatctttaaaatatttaatttttttttttttatcaattt 39503517  T
Q  170 cttctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    | ||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||| ||||||||    
T  39503516 cctctttattattaaaaaaatatttctttatgtgtgtgtgatcaaacactttttatttaatcatgtgaccatattaaaatttctc 39503432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 68 - 251
Target Start/End: Complemental strand, 20679955 - 20679770
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaata-tggtctgtaaaatattcaatcannnnnnnnnatcaa 166  Q
    ||||||||||| ||||||| ||||| |||||||||| |||||||||||| | ||||||||| | |||||| ||||||||||||| |         |||||    
T  20679955 gaggtattctttcatggtctcaagatcaaatcaatagtgtttggacacacacacataaaaaaaatggtctttaaaatattcaattatttttttt-atcaa 20679857  T
Q  167 tttcttctttattattaaaata--tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttc 251  Q
    |||| ||||||||||||||| |  ||||||||||||| |||||||  ||||| |||||||||  |||| ||||||||||||||||||    
T  20679856 tttcctctttattattaaaaaaaatatttctttatgtatgtgtgattaaacactttttatttcgtcatctgaccatattagaatttc 20679770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 262
Target Start/End: Complemental strand, 47541928 - 47541728
Alignment:
Q  62 tagaaggaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnn 161  Q
    ||||||||| ||||||| |||| |||||||| |||||||||| | |||||||||| | ||||||||| ||  ||   ||||||||||||||             
T  47541928 tagaaggagatattctttcatgatcacaagatcaaatcaataatatttggacacacacacataaaaagattttcctcaaaatattcaatcatctttttt- 47541830  T
Q  162 atcaatttcttctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctcctttaga 260  Q
    ||||||||| |  |||||||||||| | ||||| |||||||||||||||||||||| ||||| |||||||  ||||||||||||||||||||| | ||||    
T  47541829 atcaatttccttcttattattaaaaaaatatttttttatgtgtgtgtgaccaaacactttttctttgatctcgtgaccatattagaatttctcatgtaga 47541730  T
Q  261 ag 262  Q
    ||    
T  47541729 ag 47541728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 253
Target Start/End: Original strand, 17056614 - 17056793
Alignment:
Q  71 gtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaatttc 170  Q
    ||||||||||||||||||||||||||||||||| |||||| | ||| | | ||||||| || |||  ||||||||| |||||         |||||||||    
T  17056614 gtattcttccatggtcacaagaccaaatcaatagtgtttgaatacacacatataaaaa-attgtccttaaaatatttaatcattttttt--atcaatttc 17056710  T
Q  171 ttctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
     ||||||||||||||| | ||||||||||||||||| ||||||||| | ||||||||| || ||||||||| ||||||||||||    
T  17056711 ctctttattattaaaaaaatatttctttatgtgtgtatgaccaaac-acttttatttggtcgtgtgaccattttagaatttctc 17056793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 253
Target Start/End: Complemental strand, 46550813 - 46550632
Alignment:
Q  72 tattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaatttct 171  Q
    |||||||||||||||||||||||||||||||| |||||  |||||||  |||||||| ||  ||    |||||||||||||         ||||||||      
T  46550813 tattcttccatggtcacaagaccaaatcaataatgtttaaacacata--cataaaaagattctcctctaaatattcaatcatcattttt-atcaattttc 46550717  T
Q  172 tctttattattaaaata---tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||||||||||||||| |   || ||||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||    
T  46550716 tctttattattaaaaaaaaatacttctttatgtgtgtgtgaccaaacactttttctttggtcttgtgaccatattagaatttctc 46550632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 52920200 - 52920047
Alignment:
Q  69 aggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaatt 168  Q
    ||||||||||||||||||||||||||||||||||| |||||  | ||||||| ||||||| ||   ||  ||||||||||||||         |||||||    
T  52920200 aggtattcttccatggtcacaagaccaaatcaataatgtttaaatacatataaataaaaagatttacttaaaaatattcaatcatttttttttatcaatt 52920101  T
Q  169 tcttctttattattaaaatatatttctttatgtgtgtgtgaccaaacaattttt 222  Q
    |  ||||||||||||||| ||| |||||||||| |||||||| ||||| |||||    
T  52920100 ttctctttattattaaaaaatacttctttatgtatgtgtgactaaacacttttt 52920047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 162 - 254
Target Start/End: Complemental strand, 41464822 - 41464730
Alignment:
Q  162 atcaatttcttctttattattaaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctcc 254  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||||||||||||| | ||| |||  || ||| ||||||||| |||||||||    
T  41464822 atcaatttcttctttattattaaaaaatatttctccatgtgtgtgtgaccaaacactatttctttagtcctgtaaccatattataatttctcc 41464730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 47732415 - 47732509
Alignment:
Q  162 atcaatttcttctttattattaaaata-tatttcttt-atgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctcc 254  Q
    ||||||||| || |||||||||||| | ||||| ||| ||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  47732415 atcaatttcctccttattattaaaaaaatatttttttcatgcgtgtgtgatcaaacaatttttctttgatcctgtgaccatattagaatttctcc 47732509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 36364659 - 36364605
Alignment:
Q  199 tgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||||||||||||||||| |||||||||||||| |||||||||||| ||||||||    
T  36364659 tgtgtgtgtgaccaaacattttttatttgatcacgtgaccatattaaaatttctc 36364605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 36364963 - 36364897
Alignment:
Q  80 catggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattca 148  Q
    ||||||| |||||||||||||||| |||||||||||| ||  ||||||||||||||  |||||||||||    
T  36364963 catggtcgcaagaccaaatcaataatgtttggacacacat--ataaaaatatggtccttaaaatattca 36364897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 68 - 250
Target Start/End: Complemental strand, 6512195 - 6512016
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatca--nnnnnnnnnatca 165  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||| | ||||||||| |||  || |||||||||||||||           ||||    
T  6512195 gaggtattattccatggtcacaagaccaaatcaatagtgtttggacacacacacataaaaagatgaactctaaaatattcaatcatttttttttttatca 6512096  T
Q  166 atttcttctttattatt-aaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaattt 250  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||||||      |||||||||| ||||||||||||||||||||||    
T  6512095 atttcctctttattattaaaaaaatatttctttatgtgtgtgtgacc------tttttatttggtcatgtgaccatattagaattt 6512016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 68 - 253
Target Start/End: Complemental strand, 30706263 - 30706078
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnn----at 163  Q
    |||| |||||| |||||||||||||||||||||||| ||||||||||||    |||||||| ||||||  |||||||||||||||             ||    
T  30706263 gaggcattcttacatggtcacaagaccaaatcaatagtgtttggacaca----cataaaaagatggtccttaaaatattcaatcatttttttttttttat 30706168  T
Q  164 caatttcttctttattattaaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||||||| |||||| |||||||| | || | | | |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  30706167 caatttcctctttactattaaaaaaaatatttctttgtgtgtgtgaccaaacactttttatttgatcatgtgaccatattaaaatttctc 30706078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 68 - 253
Target Start/End: Original strand, 37721445 - 37721629
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaat 167  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||     |||||||| ||  |||  ||||||||||||||         ||||||    
T  37721445 gaggtattcttccatggtcacaagaccaaatcaataatatttggacacgcg--cataaaaagattctcttcaaaatattcaatcatttttttttatcaat 37721542  T
Q  168 ttcttctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||| || |||||||||||| | || ||||||||||||||||||||||||| ||||| |||  ||  |||||||||||||||||||||    
T  37721543 ttcctccttattattaaaaaaataattctttatgtgtgtgtgaccaaacactttttctttagtctcgtgaccatattagaatttctc 37721629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 254
Target Start/End: Complemental strand, 34480148 - 34480054
Alignment:
Q  162 atcaatttcttctttattattaaaatatatttctttatgtgtgt--gtgaccaaacaatttttatttgatcatgtgaccatattagaatttctcc 254  Q
    ||||||||| || |||||||||||| |||||||||||| |||||  ||||||||||| ||||| |||| || |||||||||||||||||||||||    
T  34480148 atcaatttcctccttattattaaaaaatatttctttatatgtgtttgtgaccaaacactttttctttggtcctgtgaccatattagaatttctcc 34480054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 255
Target Start/End: Original strand, 3870020 - 3870210
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttgg--acacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatca 165  Q
    |||||||||||||||||||||||||||||||||||| ||||| |  ||||| | ||||||||| ||  ||   ||||||||||||||         ||||    
T  3870020 gaggtattcttccatggtcacaagaccaaatcaataatgttttgacacacacagacataaaaagattctcctcaaaatattcaatca-tcttttttatca 3870118  T
Q  166 atttcttctttattatt----aaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctcct 255  Q
    ||||| || ||||||||    |||| ||| |||||||  |||||||||||||||| ||||| |||| || ||||||||||||||||||||||||    
T  3870119 atttcctccttattattaaaaaaaaaatacttcttta--tgtgtgtgaccaaacactttttctttggtcctgtgaccatattagaatttctcct 3870210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 253
Target Start/End: Original strand, 36400857 - 36401036
Alignment:
Q  72 tattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaatttct 171  Q
    ||||||||||||||| |||||||||||||||| |||||| ||||| | ||||||||| ||  ||   ||||||||||||||         |||||||       
T  36400857 tattcttccatggtctcaagaccaaatcaataatgtttgaacacacacacataaaaagattctcctcaaaatattcaatcatctttttt-atcaattg-- 36400953  T
Q  172 tctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||| ||||||||||| | || ||||||||||||||||| ||||||| ||||| |||  || ||||||||||||||||||||||    
T  36400954 tctctattattaaaaaaatacttctttatgtgtgtgtgtccaaacactttttctttagtcctgtgaccatattagaatttctc 36401036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 3949337 - 3949249
Alignment:
Q  162 atcaatttcttctttattattaaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaattt 250  Q
    ||||||||||| ||||||||||||| |||| ||||||||| |||||||||||||| ||||| ||| |||   ||||||||||| |||||    
T  3949337 atcaatttcttttttattattaaaaaatatctctttatgtatgtgtgaccaaacattttttctttaatcccatgaccatattataattt 3949249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 4848194 - 4848117
Alignment:
Q  174 tttattattaaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||||||||||||| |||||| |||||||||| |  ||||| || ||||||||||||||||||| ||||||||||||||||    
T  4848194 tttattattaaaaaatatttttttatgtgtggg--accaaccactttttatttgatcatgtgatcatattagaatttctc 4848117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 28734183 - 28734133
Alignment:
Q  66 aggaggtattcttccatggtcacaagaccaaatcaatactgtttggacaca 116  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  28734183 aggaggtattcttccacggtcacaagaccaaatcaataatgtttggacaca 28734133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 3647414 - 3647497
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatca 152  Q
    ||||||||||||| |||||||||||||||||||||| |||||| ||||  | ||||||||| ||  ||| |||||||||||||||    
T  3647414 gaggtattcttccttggtcacaagaccaaatcaataatgtttgaacacgaacacataaaaa-attctctttaaaatattcaatca 3647497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 11028775 - 11028857
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatca 152  Q
    ||||||||||||||| |||| ||||||||||||||| |||||||||||  | ||||||||| ||  ||  |||||||||||||||    
T  11028775 gaggtattcttccatcgtcaaaagaccaaatcaataatgtttggacac--acacataaaaagattctccttaaaatattcaatca 11028857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 254
Target Start/End: Original strand, 38879513 - 38879698
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaat 167  Q
    ||||||||||||||| ||||||||||||||| |||| |||||||||||  | ||||||||| ||  ||   |||||||| |||||         ||||||    
T  38879513 gaggtattcttccatagtcacaagaccaaattaataatgtttggacac--acacataaaaagattctcctcaaaatattaaatcatctttttttatcaat 38879610  T
Q  168 ttcttctttattatt-aaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatc--atgtgaccatattagaatttctcc 254  Q
    ||  || | |||||| |||| ||| |||||||  ||||| |||||||||| ||||| |||| ||  ||||||||||||||||||||||||    
T  38879611 tttctcctcattattaaaaaaatacttcttta--tgtgtatgaccaaacattttttctttggtcatatgtgaccatattagaatttctcc 38879698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 29685519 - 29685569
Alignment:
Q  190 atttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccat 240  Q
    |||| |||||||||||||||||||||| ||||| |||| ||||||||||||    
T  29685519 atttttttatgtgtgtgtgaccaaacactttttctttggtcatgtgaccat 29685569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 28733769 - 28733717
Alignment:
Q  198 atgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaattt 250  Q
    |||| ||| |||||||||| | ||| |||||||||||||||||||||||||||    
T  28733769 atgtatgtttgaccaaacactatttctttgatcatgtgaccatattagaattt 28733717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 9008979 - 9009038
Alignment:
Q  72 tattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatat 131  Q
    ||||||| ||||||||||||||||||| |||| | |||||||||||  ||||||| ||||    
T  9008979 tattctttcatggtcacaagaccaaataaatagtttttggacacattcacataaagatat 9009038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 9009105 - 9009163
Alignment:
Q  195 tttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||||||| | |||||||||||| | ||| |||| || ||||||||||||||||||||||    
T  9009105 tttatgtctatgtgaccaaacactatttgtttggtcttgtgaccatattagaatttctc 9009163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 29685582 - 29685522
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaa 128  Q
    |||||||||||||||||||||| |||||||  || | ||||||| |||| | |||||||||    
T  29685582 gaggtattcttccatggtcacatgaccaaagaaaaagtgtttggtcacacacacataaaaa 29685522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 69 - 253
Target Start/End: Original strand, 16253026 - 16253210
Alignment:
Q  69 aggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaatt 168  Q
    ||||||||||||||| ||||||||||||||||||| |||||||| ||| |  |||||||| ||  ||   ||||||||||||||         |||||||    
T  16253026 aggtattcttccatgttcacaagaccaaatcaataatgtttggagacaca--cataaaaagattctcctcaaaatattcaatcatctttttt-atcaatt 16253122  T
Q  169 tcttctttattattaaaa---tatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    || || ||||||||||||   ||| ||| |||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  16253123 tcctccttattattaaaaaaatatttttttttatgtgtgtgtgaccaaacactttttctttgatcatgtgatcatattagaatttctc 16253210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 69 - 253
Target Start/End: Original strand, 41942778 - 41942960
Alignment:
Q  69 aggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaatt 168  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||  |||||||| ||  |||   |||||||||||||         |||||||    
T  41942778 aggtattctttcatggtcacaagaccaaatcaataatgtttggacacata--cataaaaagattctcttcgaaatattcaatcatcattttt-atcaatt 41942874  T
Q  169 tcttctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    || || |||||||||||| | || |||||||||||||| |||||||||| ||| | |||| || ||||||||||||||||||||||    
T  41942875 tcctccttattattaaaaaaatacttctttatgtgtgtatgaccaaacactttatctttggtcgtgtgaccatattagaatttctc 41942960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 253
Target Start/End: Original strand, 24241474 - 24241658
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaat 167  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||| |  |||||||| ||  ||   ||||||||||||||         ||||||    
T  24241474 gaggtattcttccatggtcacatgaccaaatcaataatgtttggacacaca--cataaaaagattctcctcaaaatattcaatcatctttttt-atcaat 24241570  T
Q  168 ttcttctttattattaaaatatat--ttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||| || |||||||||||| | ||  || |||||||||||||||||||| | ||||| |||| || ||||||||||||||||||||||    
T  24241571 ttcctccttattattaaaaaaaatacttttttatgtgtgtgtgaccaaatactttttctttggtcctgtgaccatattagaatttctc 24241658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 7101341 - 7101276
Alignment:
Q  188 atatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||||||||||| |||||||||||||||| |||||||||||||| || ||||| ||||||||||||    
T  7101341 atatttctttatatgtgtgtgaccaaacactttttatttgatcacgtaaccatgttagaatttctc 7101276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 39744280 - 39744232
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacaca 116  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  39744280 gaggtattcttctatggtcacaagaccaaatcaataatgtttggacaca 39744232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 21356790 - 21356872
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatca 152  Q
    |||||||||||  ||||||||||||||||||||||| |||||||||||| ||  ||||||| ||  |||  ||||||||||||||    
T  21356790 gaggtattcttttatggtcacaagaccaaatcaataatgtttggacacacat--ataaaaagattctcttcaaaatattcaatca 21356872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 2344965 - 2345009
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttgga 112  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||    
T  2344965 gaggtattcttccttggtcacaagaccaaatcaataatgtttgga 2345009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 26764608 - 26764674
Alignment:
Q  183 aaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatt 249  Q
    |||| |||||| |||||||||||||||||||||| | ||| ||||  | ||||||||||||||||||    
T  26764608 aaaaaatatttgtttatgtgtgtgtgaccaaacactatttgtttggccttgtgaccatattagaatt 26764674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 253
Target Start/End: Original strand, 8971517 - 8971609
Alignment:
Q  162 atcaatttcttctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||||| ||| || |||||||||||| | || || ||||||| ||| ||||| |||| ||||| |||| || ||||||||||||||||||||||    
T  8971517 atcaagttcctccttattattaaaaaaatacttatttatgtatgtatgaccgaacactttttttttggtcctgtgaccatattagaatttctc 8971609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 34773532 - 34773472
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaa 128  Q
    |||||||||||||||| |||||||||||| |||||| |||||| ||| | | |||||||||    
T  34773532 gaggtattcttccatgatcacaagaccaactcaataatgtttgcacatacacacataaaaa 34773472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 48503918 - 48503966
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacaca 116  Q
    |||||||||||||||| ||| ||||||||||||||| | ||||||||||    
T  48503918 gaggtattcttccatgttcataagaccaaatcaataatatttggacaca 48503966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 253
Target Start/End: Original strand, 48506767 - 48506859
Alignment:
Q  162 atcaatttcttctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||| |||| || |||||||||||| | || |||||||| ||||||||| |||||| | ||| |||  ||| |||||||||||||||||||||    
T  48506767 atcattttcctccttattattaaaaaaatacttctttatatgtgtgtgatcaaacactatttctttagtcaggtgaccatattagaatttctc 48506859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 7101468 - 7101382
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggac--acatatacataaaaatatggtctgtaaaatattcaatca 152  Q
    |||||||||| ||||| ||| ||||||||||||||| |||| | ||  ||| | ||||||||| ||||||  |||||||||||||||    
T  7101468 gaggtattctcccatgatcataagaccaaatcaatagtgttggaacatacacacacataaaaagatggtccttaaaatattcaatca 7101382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 41725482 - 41725541
Alignment:
Q  66 aggaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataa 125  Q
    ||||| |||||||| |||||||||||||||||| |||| | |||||||||| | ||||||    
T  41725482 aggagctattcttctatggtcacaagaccaaataaatagtatttggacacacaaacataa 41725541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 34773408 - 34773347
Alignment:
Q  192 ttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||||| ||| ||||||| |||||| ||||| |||| || ||| ||||||||||||||||||    
T  34773408 ttctttttgtatgtgtgatcaaacactttttctttggtcctgtaaccatattagaatttctc 34773347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 67 - 253
Target Start/End: Original strand, 7080148 - 7080334
Alignment:
Q  67 ggaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaa 166  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||||||| | ||||||||| ||  |||  |||||||||||| |         |||||    
T  7080148 ggaggtattcttctatggtcacatgaccaaatcaataatgtttggacacacacacataaaaagattctcttcaaaatattcaat-aatcttttttatcaa 7080246  T
Q  167 tttcttctttattatt-aaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||| |||||| |||| |||| ||| |||||||| | |||||||||||| | ||| | |||| |||||||||||||||||||||||||    
T  7080247 tttcgtctttaatattaaaaaaatacttctttatctatgtgtgaccaaatagtttctttttggtcatgtgaccatattagaatttctc 7080334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 25337027 - 25336944
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatca 152  Q
    ||||||||||||| ||||||||||| |||||||||| |||||||||||  | ||||||||| ||  ||| |||||||||||||||    
T  25337027 gaggtattcttccttggtcacaagatcaaatcaataatgtttggacacgcacacataaaaa-attctctttaaaatattcaatca 25336944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 994870 - 994928
Alignment:
Q  195 tttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||||||||||||||||||||| | |||||||| || ||||||||| ||||||||||||    
T  994870 tttatgtgtgtgtgaccaaacactatttatttggtcttgtgaccatgttagaatttctc 994928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 2141222 - 2141175
Alignment:
Q  203 tgtgtgaccaaacaatttttatttgatcatgtgaccatattagaattt 250  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  2141222 tgtgtgaccaaacactttttctttgatcatatgaccatattagaattt 2141175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 26606213 - 26606272
Alignment:
Q  195 tttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctcc 254  Q
    |||||||||||||||||||||| ||||| || | |  ||||||||| |||||||||||||    
T  26606213 tttatgtgtgtgtgaccaaacactttttgttcggtattgtgaccatgttagaatttctcc 26606272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 169 - 85
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatca 152  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| || ||||  ||||||||||||||    
T  169 gaggtattcttccatgatcacaagaccaaatcaatagtgtttggacacacatacataaaaagatagtcttaaaaatattcaatca 85  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 253
Target Start/End: Original strand, 35366 - 35547
Alignment:
Q  72 tattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaatttct 171  Q
    |||||||||||||||||||||||||||||||| | |||| ||| | ||||||||||| ||  ||   ||||||||||||||         ||||||||||    
T  35366 tattcttccatggtcacaagaccaaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaatttct 35465  T
Q  172 tctttattatt-aaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |  |||||||| |||| |||||| ||| | || ||||||||||||| ||||| |||||||||||||| |||||| ||||||||    
T  35466 ttcttattattaaaaaaatattt-tttttatgcgtgtgaccaaacactttttctttgatcatgtgacgatattaaaatttctc 35547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 68 - 253
Target Start/End: Complemental strand, 45805644 - 45805455
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnn-----a 162  Q
    |||||||||||||||| | |||||| |||||||||| |||||| ||||| |  |||||||| ||||||| ||||||||| ||| |              |    
T  45805644 gaggtattcttccatgattacaagatcaaatcaatagtgtttgcacacaca--cataaaaagatggtctttaaaatatttaattattttttatttattta 45805547  T
Q  163 tcaatttcttctttattattaaaatat-atttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||||||| |||||||||| |||| |  |||| ||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||    
T  45805546 tcaatttcctctttattataaaaaaaacatttgtttatgtgtatgtgaccaaacactttttatttggtcatgtgaccatattagaatttctc 45805455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 253
Target Start/End: Complemental strand, 26466442 - 26466257
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnat--ca 165  Q
    ||||||||||||||||||||||||| ||||| |||| |||||| |||||||||  |||||| ||  | | |||||||||||||           ||  ||    
T  26466442 gaggtattcttccatggtcacaagatcaaattaataatgtttgaacacatata--taaaaagattctttttaaaatattcaattgtttttttttatatca 26466345  T
Q  166 atttcttctttattattaaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||||  || |||||||||||| ||| |||||||||||||||||||||||   ||||| ||| ||| ||||||||||||||||||||||    
T  26466344 attttctccttattattaaaaaatacttctttatgtgtgtgtgaccaaatttttttttttttatcctgtgaccatattagaatttctc 26466257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 47169243 - 47169429
Alignment:
Q  69 aggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatca-----nnnnnnnnnat 163  Q
    ||||||||||  || |||| ||||||||||||||| |||||||||||| | ||||||||| | ||||  |||||||||||||||              ||    
T  47169243 aggtattcttttatagtcataagaccaaatcaatagtgtttggacacacacacataaaaagagggtccataaaatattcaatcattttttttttttttat 47169342  T
Q  164 caatttcttctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttc 251  Q
    ||||||| ||||||||||||||| | ||||||||||  |||||||||| ||||| |||||||||| ||||  |||||||||| ||||||    
T  47169343 caatttcctctttattattaaaaaattatttcttta--tgtgtgtgactaaacactttttatttggtcatacgaccatattaaaatttc 47169429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 39170983 - 39170905
Alignment:
Q  174 tttattattaaa-atatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||||||||||| | |||||||||||||||||||  |||||||| | ||||||||||| ||||||||||||||||||||||    
T  39170983 tttattattaaataaatatttctttatgtgtgtg--accaaacattatttatttgatcttgtgaccatattagaatttctc 39170905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 253
Target Start/End: Original strand, 2008395 - 2008580
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaat 167  Q
    |||| ||||||||||| ||||||||||||||||||| | |||||||||| | | ||||||| ||  ||   ||||||||||||||         ||||||    
T  2008395 gaggcattcttccatgatcacaagaccaaatcaataatatttggacacacacatataaaaagattctcctcaaaatattcaatcatctttttt-atcaat 2008493  T
Q  168 ttcttctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||  || |||||||||||| | || |  |||||||||||||| ||||||| | ||| |||| || ||||||||||||||||||||||    
T  2008494 tttctccttattattaaaaaaatactaatttatgtgtgtgtggccaaacactatttctttggtcctgtgaccatattagaatttctc 2008580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 253
Target Start/End: Original strand, 22220206 - 22220389
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatcannnnnnnnnatcaat 167  Q
    |||||||||||||||||||| |||| |||||||||| |||||| ||||  | ||||||||| ||  |    ||||||||||||||         ||||||    
T  22220206 gaggtattcttccatggtcaaaagatcaaatcaataatgtttgtacac--acacataaaaagattcttctcaaaatattcaatcatctttttttatcaat 22220303  T
Q  168 ttcttctttattattaaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    ||| || |||||||||||| |   || || ||||||||||| ||||| | ||||| |||| || ||||||||||||| ||||||||    
T  22220304 ttcctccttattattaaaaaaagatttttcatgtgtgtgtgtccaaatactttttctttggtcctgtgaccatattaaaatttctc 22220389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 22831194 - 22831103
Alignment:
Q  162 atcaatttcttctttattattaaaata-tatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttct 252  Q
    |||| |||| || |||||||||||| | || |||||||| |||||||||| ||||| ||||| ||||||| ||||||||||||| |||||||    
T  22831194 atcactttcctccttattattaaaaaaatacttctttatatgtgtgtgactaaacactttttctttgatcctgtgaccatattaaaatttct 22831103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 25199073 - 25199123
Alignment:
Q  203 tgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||||||||||||| ||||| |||| || ||||||||||||||||||||||    
T  25199073 tgtgtgaccaaacactttttctttggtcctgtgaccatattagaatttctc 25199123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 39056873 - 39056803
Alignment:
Q  183 aaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||| ||| ||| |||| ||| || ||||||||||||||||| ||||  ||||||||||||||||||||||    
T  39056873 aaaaaatacttccttatatgtatgcgaccaaacaatttttatgtgatattgtgaccatattagaatttctc 39056803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 1994838 - 1994781
Alignment:
Q  196 ttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||||||| |||||||||| | | ||| |||| |||||||||||||||||||||||||    
T  1994838 ttatgtgtctgtgaccaaatactatttctttggtcatgtgaccatattagaatttctc 1994781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 14785016 - 14785099
Alignment:
Q  162 atcaatttcttctttattattaaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatt 249  Q
    ||||||||| | ||||||||||||| ||| ||||||||||||||||  ||||||| | |||||||| ||  |||| ||||||||||||    
T  14785016 atcaatttcctttttattattaaaaaatacttctttatgtgtgtgt--ccaaacactatttatttggtc--gtgatcatattagaatt 14785099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 44880253 - 44880298
Alignment:
Q  71 gtattcttccatggtcacaagaccaaatcaatactgtttggacaca 116  Q
    |||||||| |||||||||||||||||||||||| |||||| |||||    
T  44880253 gtattctttcatggtcacaagaccaaatcaataatgtttgaacaca 44880298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 1994957 - 1994915
Alignment:
Q  72 tattcttccatggtcacaagaccaaatcaatactgtttggaca 114  Q
    |||||| | ||||||||||||||||||||||| ||||||||||    
T  1994957 tattctactatggtcacaagaccaaatcaataatgtttggaca 1994915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 39056982 - 39056937
Alignment:
Q  71 gtattcttccatggtcacaagaccaaatcaatactgtttggacaca 116  Q
    ||||||||||||| || |||||||||||| ||| ||||||||||||    
T  39056982 gtattcttccatgatcgcaagaccaaatctataatgtttggacaca 39056937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 25945 - 26019
Alignment:
Q  179 tattaaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttctcct 255  Q
    ||||||||||||||||||||||||||||   ||||||| ||||  | || |||||||||||||||||||||||||||    
T  25945 tattaaaatatatttctttatgtgtgtgc--ccaaacacttttcctatggtcatgtgaccatattagaatttctcct 26019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 25681 - 25732
Alignment:
Q  65 aaggaggtattcttccatggtcacaagaccaaatcaatactgtttggacaca 116  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  25681 aaggaggtattcttccatgatcacgagaccaaatcaataatgtttggacaca 25732  T

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Target: scaffold0288 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 18048 - 17977
Alignment:
Q  183 aaaatatatttctttatgtgtgtgtgaccaaaca-atttttatttgatcatgtgaccatattagaatttctc 253  Q
    |||| ||| |||||||||||||||||||||||||  ||||| |||| ||  |||||||||||||||||||||    
T  18048 aaaaaatacttctttatgtgtgtgtgaccaaacacttttttctttggtcccgtgaccatattagaatttctc 17977  T

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Target: scaffold0288; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 18167 - 18119
Alignment:
Q  68 gaggtattcttccatggtcacaagaccaaatcaatactgtttggacaca 116  Q
    |||||||||||||||||| |||||| | |||||||| |||||| |||||    
T  18167 gaggtattcttccatggttacaagatccaatcaataatgtttgaacaca 18119  T

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Target: scaffold0830 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 5462 - 5407
Alignment:
Q  97 atcaatactgtttggacacatatacataaaaatatggtctgtaaaatattcaatca 152  Q
    ||||||| |||||||||||| ||||||||||| || ||||  ||||||||||||||    
T  5462 atcaatagtgtttggacacacatacataaaaagatagtcttaaaaatattcaatca 5407  T

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Target: scaffold0289 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 12372 - 12443
Alignment:
Q  181 ttaaaatatatttctttatgtgtgtgtgaccaaacaatttttatttgatcatgtgaccatattagaatttct 252  Q
    |||||| |||||| |||||||||  ||||||||| | ||||| |||| || ||||||||| |||||||||||    
T  12372 ttaaaaaatatttgtttatgtgttggtgaccaaatactttttgtttggtcttgtgaccatgttagaatttct 12443  T

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