View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21213_low_34 (Length: 364)

Name: NF21213_low_34
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21213_low_34
NF21213_low_34
[»] chr3 (2 HSPs)
chr3 (11-346)||(24498510-24498847)
chr3 (266-314)||(23629299-23629347)
[»] chr2 (4 HSPs)
chr2 (273-326)||(19955094-19955146)
chr2 (266-316)||(9559675-9559725)
chr2 (274-326)||(9047650-9047701)
chr2 (266-326)||(14812317-14812376)
[»] chr8 (1 HSPs)
chr8 (261-326)||(2072205-2072269)
[»] chr7 (2 HSPs)
chr7 (266-326)||(7712501-7712560)
chr7 (266-326)||(24316275-24316334)
[»] chr5 (1 HSPs)
chr5 (274-326)||(40220378-40220430)
[»] chr4 (1 HSPs)
chr4 (248-344)||(8291058-8291154)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 24498847 - 24498510
Alignment:
Q  11 agaatatatgaaattagatg--gatgtaatagcatttgttttggttttaagattttggataaattacacttcagtctattttagcatcaatggtcgcata 108  Q
    |||| |||||||||| ||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24498847 agaaaatatgaaattggatgtggatgtaatggcatttgttttggttttaagattttggataaattacacttcagtctattttagcatcaatggtcgcata 24498748  T
Q  109 tttcaagaaaagatttcttactttcagtgtcaagtaaattttaataccttatttaggacttcagaaaaatgaagttagattatgtttaagagaaatgtta 208  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24498747 tttcaagaaaagatttcttactttcagtgtcaagtaatttttaataccttatttaggacttcagaaaaatgaagttagattatgtttaagagaaatgtta 24498648  T
Q  209 ataagtgtccatgagacattgttaagaaggcaaaagaaataacttttgcttaaaaatttgtgtaattataactttgacaagtgtttgatttgtattttca 308  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  24498647 ataagtgtccgtgagacattgttaagaaggcaaaagaaataacttttgcttaaaaatttgtgtaattatgactttgataagtgtttgatttgtattttca 24498548  T
Q  309 aaacaaaactttctttttcgtagtccttaaacaatgtt 346  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  24498547 aaacaaaactttcttttacgtattccttaaacaatgtt 24498510  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 23629299 - 23629347
Alignment:
Q  266 ttgtgtaattataactttgacaagtgtttgatttgtattttcaaaacaa 314  Q
    |||| ||||||| ||||| ||| ||||||||||||||||||||||||||    
T  23629299 ttgtataattatgacttttacatgtgtttgatttgtattttcaaaacaa 23629347  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 19955146 - 19955094
Alignment:
Q  273 attataactttgacaagtgtttgatttgtattttcaaaacaaaactttcttttt 326  Q
    ||||| ||||| ||||||||||||||||||||||||||||| || |||||||||    
T  19955146 attatgactttaacaagtgtttgatttgtattttcaaaacataa-tttcttttt 19955094  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 9559725 - 9559675
Alignment:
Q  266 ttgtgtaattataactttgacaagtgtttgatttgtattttcaaaacaaaa 316  Q
    ||||||| |||||| ||| ||| |||||||| |||||||||||||||||||    
T  9559725 ttgtgtagttataatttttacacgtgtttgacttgtattttcaaaacaaaa 9559675  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 9047650 - 9047701
Alignment:
Q  274 ttataactttgacaagtgtttgatttgtattttcaaaacaaaactttcttttt 326  Q
    |||| ||||| |||||||||||| |||||||||||||||| || |||||||||    
T  9047650 ttatgactttaacaagtgtttgacttgtattttcaaaacataa-tttcttttt 9047701  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 14812317 - 14812376
Alignment:
Q  266 ttgtgtaattataactttgacaagtgtttgatttgtattttcaaaacaaaactttcttttt 326  Q
    |||||||||||||||||| |||  ||||||| |||||||||||| | |||| |||||||||    
T  14812317 ttgtgtaattataacttttacatatgtttgacttgtattttcaagataaaa-tttcttttt 14812376  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 2072205 - 2072269
Alignment:
Q  261 aaaatttgtgtaattataactttgacaagtgtttgatttgtattttcaaaacaaaactttcttttt 326  Q
    |||| ||||||| |||||||||| | | ||||||||||||||||||||| | |||| |||||||||    
T  2072205 aaaaattgtgtagttataacttttatatgtgtttgatttgtattttcaagagaaaa-tttcttttt 2072269  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 7712560 - 7712501
Alignment:
Q  266 ttgtgtaattataactttgacaagtgtttgatttgtattttcaaaacaaaactttcttttt 326  Q
    |||||||||||| ||||| | |  ||||||| ||||||||||||||| |||||||||||||    
T  7712560 ttgtgtaattatcacttttatatttgtttgacttgtattttcaaaac-aaactttcttttt 7712501  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 24316334 - 24316275
Alignment:
Q  266 ttgtgtaattataactttgacaagtgtttgatttgtattttcaaaacaaaactttcttttt 326  Q
    |||||||||||||||||| | |  | ||||| ||||||||||||||| |||||||||||||    
T  24316334 ttgtgtaattataacttttatacatatttgacttgtattttcaaaac-aaactttcttttt 24316275  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 40220430 - 40220378
Alignment:
Q  274 ttataactttgacaagtgtttgatttgtattttcaaaacaaaactttcttttt 326  Q
    |||| |||||||||||| ||||| |||||||||||| |||||| || ||||||    
T  40220430 ttatgactttgacaagtatttgacttgtattttcaagacaaaatttccttttt 40220378  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 344
Target Start/End: Complemental strand, 8291154 - 8291058
Alignment:
Q  248 taacttttgcttaaaaatttgtgtaattataactttgacaagtgtttgatttgtattttcaaaacaaaactttctttttcgtagtccttaaacaatg 344  Q
    |||||||||| || ||| |  ||||||||| ||| |||||||||||||| |||||||| ||| |||||  || ||| |  ||| |||||||||||||    
T  8291154 taacttttgcatagaaaatgatgtaattatgactatgacaagtgtttgacttgtatttccaagacaaattttccttatatgtattccttaaacaatg 8291058  T

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