View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_36 (Length: 351)
Name: NF21213_low_36
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_36 |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 16262687 - 16262397
Alignment:
| Q |
10 |
aagaatatgaaggtgaaaattgtataccttgctattgcaattgatggttttgagatttgaacgatggttgtagtagagtttagaaggaaagggttggtga |
109 |
Q |
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| T |
16262687 |
aagaacatgaaggtgaaaattgtataccttgctattgcaattgatggttttgagatttgaacgatggttgtagtagagtttagaaggaaagggttggtga |
16262588 |
T |
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| Q |
110 |
tgaagaatatgaacattgtttggtgagaagtggtgaagattggagcgtggagaggacgtgagattgatcaattgtgttgttgttgtagctgccatttgag |
209 |
Q |
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| T |
16262587 |
tgaagaatatgaacattgttcggtgagaagtggtgaagattggagcgtggagaggacgtgagattgatcaattgtgttgttgttgtagctgccatttgag |
16262488 |
T |
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| Q |
210 |
accgaacattaagcttttaaagattttgttttatttattatcacccaccatcgttaggaaaaagaacaaaaacgaaaacaataatctctta |
300 |
Q |
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| T |
16262487 |
accgaacattaagcttttaaagattttgttttatttattatcacccaccatcgttaggaaaaagaacaaaaacgaaaacaataatctctta |
16262397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 36268 - 36545
Alignment:
| Q |
16 |
atgaaggtgaaaattgtataccttgctattgcaattgatggttttgagatttgaacgatggttgtagtagagtttagaaggaaagggttggtgatgaaga |
115 |
Q |
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| T |
36268 |
atgaaggtgaaaattatataccttgctattgcaattgatggtatggagatttgaacgatggttgtagtagagtttggaaggaaagggttggtgatgaaga |
36367 |
T |
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| Q |
116 |
atatgaacattgtttggtgagaagtggtgaagattggagcgtggagaggacgtgagattgatcaattgtgttgttgttgtagctgccatttgagaccgaa |
215 |
Q |
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| T |
36368 |
atatgaacattgtttactgagaagtggtgaagattgaagcgtggaaagcgcgtgagattgatcaattgtgttgttgttgtagctgccatttgagaccgaa |
36467 |
T |
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| Q |
216 |
cattaagcttttaaagattttgttttatttattatcacccaccatcgttaggaaaaagaacaaaaacgaaaacaataatctctta |
300 |
Q |
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| T |
36468 |
cattaagcttttaaagattttgtt-------ttatcacccaccatcgttagaaaaaagagcaaaaccgaaaataacaatctctta |
36545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 52438465 - 52438185
Alignment:
| Q |
16 |
atgaaggtgaaaattgtataccttgctattgcaattgatggttttgagatttgaacgatggttgtagtagagtttagaaggaaagggttggtgatgaaga |
115 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52438465 |
atgaaggtgaaaattatataccttgcaattgcaattgatggttttgagatttgaacgatggttgtagtagagtttggaaggaaagggttggtgatgaaga |
52438366 |
T |
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| Q |
116 |
atatgaacattgtttggtgagaagtggtgaagattggagcgtggagaggacgtgagattgatcaattgtgttgttg---ttgtagctgccatttgagacc |
212 |
Q |
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| T |
52438365 |
atgtgaacattgtttactgagaagtggtgaagattgaagcgtggaaagcgcgtgagattgatcaattgtgttgttgttgttgtagctgccatttgagacc |
52438266 |
T |
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| Q |
213 |
gaacattaagcttttaaagattttgttttatttattatcacccaccatcgttaggaaaaagaacaaaaacgaaaacaataatctctta |
300 |
Q |
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| T |
52438265 |
gaacattaagcttttaaagattttgtt-------ttatcacccaccatcgttagaaaaaagagcaaaaatgaaaataacaatctctta |
52438185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 14213711 - 14213434
Alignment:
| Q |
16 |
atgaaggtgaaaattgtataccttgctattgcaattgatggttttgagatttgaacgatggttgtagtagagtttagaaggaaagggttggtgatgaaga |
115 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14213711 |
atgaaggtgaaaattatataccttgctattgcaattgatggttttgagatttgaacgatggttgtagtagagtttggaaggaaagggttggtgatgaaga |
14213612 |
T |
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| Q |
116 |
atatgaacattgtttggtgagaagtggtgaagattggagcgtggagaggacgtgagattgatcaattgtgttgttgttgtagctgccatttgagaccgaa |
215 |
Q |
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| T |
14213611 |
atgtgaacattgtttactgagaagtggcgaagattgaagcgtggaaagcgtgtgagattgatcaattgtgttgtcgttgtagctgccatttgagaccgaa |
14213512 |
T |
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| Q |
216 |
cattaagcttttaaagattttgttttatttattatcacccaccatcgttaggaaaaagaacaaaaacgaaaacaataatctctta |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||| ||||| || ||||||||| |
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| T |
14213511 |
cattaagcttttaaagattttgtt-------ttatcacccaccatcgttataaaaaagagcaaaaatgaaaataacaatctctta |
14213434 |
T |
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