View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21213_low_37 (Length: 347)

Name: NF21213_low_37
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21213_low_37
NF21213_low_37
[»] chr8 (8 HSPs)
chr8 (206-339)||(9847302-9847435)
chr8 (7-167)||(9842203-9842364)
chr8 (7-118)||(9847233-9847345)
chr8 (7-118)||(9903132-9903244)
chr8 (145-210)||(9842404-9842469)
chr8 (24-121)||(9860861-9860959)
chr8 (151-210)||(9903287-9903346)
chr8 (206-251)||(9842272-9842317)
[»] chr5 (2 HSPs)
chr5 (7-108)||(2326113-2326215)
chr5 (58-194)||(39576625-39576761)
[»] chr3 (1 HSPs)
chr3 (9-97)||(7257026-7257115)
[»] chr6 (1 HSPs)
chr6 (29-123)||(112359-112454)
[»] chr1 (1 HSPs)
chr1 (7-190)||(46671765-46671948)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 206 - 339
Target Start/End: Original strand, 9847302 - 9847435
Alignment:
Q  206 acactaacaatctagtttgattgccaagtactccggcatagctaagattcctggaaatattgatactctatccttgatgactttatacttgatatatatt 305  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9847302 acactaacaatctagtttcattgccaagtactccggcatagctaagattcctggaaatattgatactctatccttgatgactttatatttgatatatatt 9847401  T
Q  306 gtgttgctgatcttttatttgttgttcctatgct 339  Q
    ||||||||| |||||| |||||||||||| ||||    
T  9847402 gtgttgctggtcttttttttgttgttcctgtgct 9847435  T

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Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 9842203 - 9842364
Alignment:
Q  7 acaatgtgaagacctggcaatcgacaaagattgaggacattgatgtaggcaattttgaagtatgtcttcacac-aacagtctagtttcattgccaagtac 105  Q
    |||||||||||||| |||||| ||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  9842203 acaatgtgaagaccaggcaattgacaaagattgaggacattgacgttggcaactttgaagtatgtcttcacactaacagtctagtttcattgccaggtac 9842302  T
Q  106 tccagcatagctatgttttccgctacaagatatgtagcagtattgtttatattcctcttagc 167  Q
    ||| ||||||||| |||||| |||| || |||||||| ||||||||||||||| ||||||||    
T  9842303 tcctgcatagctaagttttctgctataatatatgtagtagtattgtttatatttctcttagc 9842364  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 9847233 - 9847345
Alignment:
Q  7 acaatgtgaagacctggcaatcgacaaagattgaggacattgatgtaggcaattttgaagtatgtcttcacac-aacagtctagtttcattgccaagtac 105  Q
    |||||||||||||| |||||| ||| |||||| ||||||| ||||  || ||| |||||||||| |||||||| |||| |||||||||||||||||||||    
T  9847233 acaatgtgaagaccaggcaattgactaagattaaggacatcgatgagggaaatattgaagtatggcttcacactaacaatctagtttcattgccaagtac 9847332  T
Q  106 tccagcatagcta 118  Q
    ||| |||||||||    
T  9847333 tccggcatagcta 9847345  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 9903132 - 9903244
Alignment:
Q  7 acaatgtgaagacctggcaatcgacaaagattgaggacattgatgtaggcaattttgaagtatgtcttcacac-aacagtctagtttcattgccaagtac 105  Q
    ||||||||||||||   |||| || |||||||||||||||||| || ||  ||||| |||||||  ||||||| |||||||||||||||||| |||||||    
T  9903132 acaatgtgaagaccaaacaattgataaagattgaggacattgacgtgggagattttaaagtatggtttcacactaacagtctagtttcattgtcaagtac 9903231  T
Q  106 tccagcatagcta 118  Q
    |||| ||||||||    
T  9903232 tccaccatagcta 9903244  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 9842404 - 9842469
Alignment:
Q  145 gtattgtttatattcctcttagctgaaaaacaagtatctatatttctattttgatatggaaacact 210  Q
    |||||||||||||| |||||||||||||||||||||  ||| ||||||||||||| ||||||||||    
T  9842404 gtattgtttatatttctcttagctgaaaaacaagtagttatgtttctattttgatgtggaaacact 9842469  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 9860861 - 9860959
Alignment:
Q  24 caatcgacaaagattgaggacattgatgtaggcaattttgaagtatgtcttcacac-aacagtctagtttcattgccaagtactccagcatagctatgt 121  Q
    |||| ||||| ||| |||| ||||||||| ||  ||||||| |||||   |||||  |||||| |||||||||||||| ||||||||||||||||||||    
T  9860861 caattgacaatgatcgagggcattgatgtgggtgattttgaggtatggtctcacattaacagtttagtttcattgccatgtactccagcatagctatgt 9860959  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 9903287 - 9903346
Alignment:
Q  151 tttatattcctcttagctgaaaaacaagtatctatatttctattttgatatggaaacact 210  Q
    |||||||| |||||||||| ||||| ||||| |||  |||||||||||| ||||||||||    
T  9903287 tttatatttctcttagctggaaaactagtatttatgcttctattttgatttggaaacact 9903346  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 9842272 - 9842317
Alignment:
Q  206 acactaacaatctagtttgattgccaagtactccggcatagctaag 251  Q
    ||||||||| |||||||| ||||||| ||||||| |||||||||||    
T  9842272 acactaacagtctagtttcattgccaggtactcctgcatagctaag 9842317  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 2326215 - 2326113
Alignment:
Q  7 acaatgtgaagacctggcaatcgacaaagattgaggacattgatgtaggcaattttgaagtatgtcttcacac-aacagtctagtttcattgccaagtac 105  Q
    |||||||||| ||| |||||| |||||||||||  ||||||||||| ||| |||||||||||||||||||||| |||||| || ||||||||||| ||||    
T  2326215 acaatgtgaataccaggcaattgacaaagattggagacattgatgtgggccattttgaagtatgtcttcacactaacagtttaatttcattgccacgtac 2326116  T
Q  106 tcc 108  Q
    |||    
T  2326115 tcc 2326113  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 194
Target Start/End: Original strand, 39576625 - 39576761
Alignment:
Q  58 attttgaagtatgtcttcacac-aacagtctagtttcattgccaagtactccagcatagctatgttttccgctacaagatatgtagcagtattgtttata 156  Q
    ||||||||||||| |||||||| ||||||||  ||||||| |||||||||||  |||||||| |||||  | || || |||| |||||||||| ||||||    
T  39576625 attttgaagtatggcttcacactaacagtcttttttcatttccaagtactccgacatagcta-gttttgtggtataatatatttagcagtattatttata 39576723  T
Q  157 ttcctcttagctgaaaaacaagtatctatatttctatt 194  Q
        ||||   |||||||||||||| ||| ||||||||    
T  39576724 gctgtcttgtttgaaaaacaagtatttatgtttctatt 39576761  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 7257026 - 7257115
Alignment:
Q  9 aatgtgaagacctggcaatcgacaaagattgaggacattgatgtaggcaattttgaagtatgtcttcacac-aacagtctagtttcattg 97  Q
    |||||||||||| |||||| ||| ||||||||||||||||   | |||||||||||||||||   |||||| ||||||||||||| ||||    
T  7257026 aatgtgaagaccaggcaattgactaagattgaggacattggaatgggcaattttgaagtatggtctcacactaacagtctagttttattg 7257115  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 112454 - 112359
Alignment:
Q  29 gacaaagattgaggacattgatgtaggcaattttgaagtatgtcttcacacaac-agtctagtttcattgccaagtactccagcatagctatgttt 123  Q
    |||||||||||| ||||||   || ||| ||||||||| ||| ||||| ||||  | ||||||||||||||||||||||||| |||||||| ||||    
T  112454 gacaaagattgatgacattatagtgggccattttgaagcatggcttcatacaaatactctagtttcattgccaagtactccaacatagctaggttt 112359  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 190
Target Start/End: Complemental strand, 46671948 - 46671765
Alignment:
Q  7 acaatgtgaagacctggcaatcgacaaagattgaggacattgatgtaggcaattttgaagtatgtcttcacac-aacagtctagtttcattgccaagtac 105  Q
    ||||||| |||||| | |||  ||||| |||| ||| ||||||||| ||| ||||  | ||||| |||||||| |||||||  ||| ||| |||||||||    
T  46671948 acaatgtcaagaccagacaactgacaatgattaagggcattgatgtgggcgattta-aggtatggcttcacactaacagtcgtgttacatggccaagtac 46671850  T
Q  106 tccagcatagctatgttttccgctacaagatatgtagcagtattgtttatattcctcttagctgaaaaacaagtatctatatttc 190  Q
    |||| |||||||| |||| | | || ||  ||||||| | |||| ||||||||  |||||| ||||| |||| ||| ||| ||||    
T  46671849 tccaacatagctaggtttcctggtataatttatgtagtattattatttatatttgtcttagttgaaacacaaatatttatgtttc 46671765  T

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