View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21213_low_40 (Length: 324)
Name: NF21213_low_40
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_40 |
 | |
|
| [»] scaffold0105 (5 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold1330 (1 HSPs) |
| | |
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| [»] scaffold0496 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 7458417 - 7458127
Alignment:
| Q |
15 |
cagagaacatcatcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttggg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
7458417 |
cagagaacatcatcaacatcccatcacagtgcaactatacacaaagctccctattttctttcttgcaagttgattccattgtatcgctctttcatttggg |
7458318 |
T |
|
| Q |
115 |
acccaagcattgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7458317 |
acccaagcattgatttccaacatgcctctacaatgaagaatgggacctccaagaaaaattagcatatctccacatgcacgaaaagctaatccccaacctt |
7458218 |
T |
|
| Q |
215 |
tcattgaagtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttgcgtaatc |
305 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
7458217 |
tcattgaggtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttatcatacttctttacttcctttgttgcgtaatc |
7458127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 7412339 - 7412048
Alignment:
| Q |
15 |
cagagaacatcatcaa-catcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgg |
113 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
7412339 |
cagagaacatcatcaaacatcccatcacagtgcaactatacacaaagctccctattttctttcttgcaagttgattccattgtatcgctctttcatttgg |
7412240 |
T |
|
| Q |
114 |
gacccaagcattgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7412239 |
gacccaagcattgatttccaacatgcctctacaatgaagaatgggacctccaagaaaaattagcatatctccacatgcacgaaaagctaatccccaacct |
7412140 |
T |
|
| Q |
214 |
ttcattgaagtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttgcgtaatc |
305 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
7412139 |
ttcattgaggtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttatcatacttctttacttcctttgttgcgtaatc |
7412048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 13031461 - 13031387
Alignment:
| Q |
18 |
agaacatcatcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattcca |
92 |
Q |
| |
|
|||||| |||||||||||||||||| |||| ||| ||||||||||||| || ||||||||||||||||||||| |
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|
| T |
13031461 |
agaacaacatcaacatcccatcacagtgcagttatgcacaaagctccctgattgctttctcgcaagttgattcca |
13031387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 7419361 - 7419439
Alignment:
| Q |
18 |
agaacatcatcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgt |
96 |
Q |
| |
|
|||||| |||||| ||||||||||| |||| ||| ||||||||||||| || |||||||||||| |||||||||||| |
|
|
| T |
7419361 |
agaacaacatcaatatcccatcacagtgcagttatgcacaaagctccctgattgctttctcgcaagctgattccattgt |
7419439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 289
Target Start/End: Original strand, 3433 - 3697
Alignment:
| Q |
25 |
catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat |
124 |
Q |
| |
|
|||||||||||||||||| | ||| ||| |||||| | |||| || |||| ||||| ||||||||||| | ||| ||||||||||| |||||||| |
|
|
| T |
3433 |
catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat |
3532 |
T |
|
| Q |
125 |
tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt |
224 |
Q |
| |
|
||||||||| ||| || || ||||| || |||||||| ||||| | ||| |||||| ||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
3533 |
tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt |
3632 |
T |
|
| Q |
225 |
ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttactt |
289 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| ||||||| |
|
|
| T |
3633 |
agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt |
3697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 289
Target Start/End: Original strand, 15580 - 15844
Alignment:
| Q |
25 |
catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat |
124 |
Q |
| |
|
|||||||||||||||||| | ||| ||| |||||| | |||| || |||| ||||| ||||||||||| | ||| ||||||||||| |||||||| |
|
|
| T |
15580 |
catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat |
15679 |
T |
|
| Q |
125 |
tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt |
224 |
Q |
| |
|
||||||||| ||| || || ||||| || |||||||| ||||| | ||| |||||| ||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
15680 |
tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt |
15779 |
T |
|
| Q |
225 |
ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttactt |
289 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| ||||||| |
|
|
| T |
15780 |
agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt |
15844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 289
Target Start/End: Complemental strand, 35659 - 35395
Alignment:
| Q |
25 |
catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat |
124 |
Q |
| |
|
|||||||||||||||||| | ||| ||| |||||| | |||| || |||| ||||| ||||||||||| | ||| ||||||||||| |||||||| |
|
|
| T |
35659 |
catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat |
35560 |
T |
|
| Q |
125 |
tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt |
224 |
Q |
| |
|
||||||||| ||| || || ||||| || |||||||| ||||| | ||| |||||| ||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
35559 |
tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt |
35460 |
T |
|
| Q |
225 |
ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttactt |
289 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| ||||||| |
|
|
| T |
35459 |
agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt |
35395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 289
Target Start/End: Complemental strand, 49259 - 48995
Alignment:
| Q |
25 |
catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat |
124 |
Q |
| |
|
|||||||||||||||||| | ||| ||| |||||| | |||| || |||| ||||| ||||||||||| | ||| ||||||||||| |||||||| |
|
|
| T |
49259 |
catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat |
49160 |
T |
|
| Q |
125 |
tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt |
224 |
Q |
| |
|
||||||||| ||| || || ||||| || |||||||| ||||| | ||| |||||| ||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
49159 |
tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt |
49060 |
T |
|
| Q |
225 |
ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttactt |
289 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| ||||||| |
|
|
| T |
49059 |
agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt |
48995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 289
Target Start/End: Original strand, 9515 - 9779
Alignment:
| Q |
25 |
catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat |
124 |
Q |
| |
|
|||||||||||||||||| | ||| ||| |||||| | |||| || |||| ||||| ||||||||||| | ||| ||||||||||| |||||||| |
|
|
| T |
9515 |
catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat |
9614 |
T |
|
| Q |
125 |
tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt |
224 |
Q |
| |
|
||||||||| ||| | || ||||| || |||||||| ||||| | ||| |||||| ||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
9615 |
tgatttccatcattattgcaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt |
9714 |
T |
|
| Q |
225 |
ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttactt |
289 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| ||||||| |
|
|
| T |
9715 |
agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt |
9779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 289
Target Start/End: Original strand, 3320 - 3584
Alignment:
| Q |
25 |
catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat |
124 |
Q |
| |
|
|||||||||||||||||| | ||| ||| |||||| | |||| || |||| ||||| ||||||||||| | ||| ||||||||||| |||||||| |
|
|
| T |
3320 |
catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat |
3419 |
T |
|
| Q |
125 |
tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt |
224 |
Q |
| |
|
||||||||| ||| | || ||||| || |||||||| ||||| | ||| |||||| ||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
3420 |
tgatttccatcattattgcaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt |
3519 |
T |
|
| Q |
225 |
ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttactt |
289 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| ||||||| |
|
|
| T |
3520 |
agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt |
3584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1330 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1330
Description:
Target: scaffold1330; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 289
Target Start/End: Complemental strand, 1997 - 1794
Alignment:
| Q |
86 |
gattccattgtatcgctctttcatttgggacccaagcattgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctcc |
185 |
Q |
| |
|
||||||||||| | ||| ||||||||||| ||||||||||||||||| ||| | || ||||| || |||||||| ||||| | ||| |||||| |
|
|
| T |
1997 |
gattccattgtggctctccttcatttgggatccaagcattgatttccatcattattgcaccatgaataacaggacctccaagaaataatagatgatctcc |
1898 |
T |
|
| Q |
186 |
acatgcacgaaaggctaatccccaacctttcattgaagtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatactttttt |
285 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| ||| |
|
|
| T |
1897 |
gcatgctcgaaaggctaatccccaaccattcatcgaagtagcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttcttt |
1798 |
T |
|
| Q |
286 |
actt |
289 |
Q |
| |
|
|||| |
|
|
| T |
1797 |
actt |
1794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 290
Target Start/End: Complemental strand, 3123 - 2991
Alignment:
| Q |
158 |
gacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagtggcttgctcaggaaatcttccaatggtaaccca |
257 |
Q |
| |
|
||||||| ||||| | ||| |||||||||||| ||||| |||| ||||||||| |||| || || |||||||||||||| ||||||||| | ||||| |
|
|
| T |
3123 |
gacctccaagaaataatagtttatctccacatgatcgaaatgctagtccccaaccattcaccgatgtagcttgctcaggaaagcttccaatgatgaccca |
3024 |
T |
|
| Q |
258 |
agagttattgtttttattatacttttttacttc |
290 |
Q |
| |
|
| |||| |||| ||||| |||||| |||||||| |
|
|
| T |
3023 |
atagttgttgtctttatcatacttctttacttc |
2991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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