View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21213_low_42 (Length: 309)

Name: NF21213_low_42
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21213_low_42
NF21213_low_42
[»] chr5 (13 HSPs)
chr5 (18-290)||(1599490-1599762)
chr5 (18-290)||(8529581-8529853)
chr5 (18-290)||(8536145-8536417)
chr5 (18-290)||(9073922-9074200)
chr5 (184-290)||(8547439-8547545)
chr5 (18-119)||(8547327-8547440)
chr5 (18-66)||(8637753-8637801)
chr5 (18-66)||(8645098-8645146)
chr5 (221-290)||(2844444-2844513)
chr5 (221-290)||(2856277-2856346)
chr5 (221-290)||(2873887-2873956)
chr5 (18-66)||(2873726-2873774)
chr5 (30-66)||(8678642-8678678)
[»] chr7 (2 HSPs)
chr7 (18-290)||(48361042-48361314)
chr7 (215-265)||(35780498-35780548)
[»] chr4 (1 HSPs)
chr4 (18-290)||(9443742-9444014)
[»] chr6 (1 HSPs)
chr6 (183-258)||(16717058-16717133)
[»] scaffold0627 (1 HSPs)
scaffold0627 (184-290)||(5328-5434)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 1599490 - 1599762
Alignment:
Q  18 ttggaagcaacgatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggataaaagtgacgagatcaataatgaatccaagcgccc 117  Q
    ||||||||||||||| ||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1599490 ttggaagcaacgatcgtgtgaagcttgcgcctatgttcaagcttcctctcagatcatttagggataaaagtgacgagatcaataatgaatccaagcgccc 1599589  T
Q  118 ttttcgtgctgcgagattagtttcggggaaaaaggatgagaacggtgataggggtagacaaagtctttatattgcttgcaacagtgattttgataagttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1599590 ttttcgtgctgcgagattagtttcggggaaaaaggatgagaacagtgatacgggtagacaaagtctttatattgcttgcaacagtgattttgataagttt 1599689  T
Q  218 aatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgca 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1599690 aatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgca 1599762  T

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Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 8529853 - 8529581
Alignment:
Q  18 ttggaagcaacgatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggataaaagtgacgagatcaataatgaatccaagcgccc 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  8529853 ttggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggataaaagagaccagatcaataatgaatccaagcgccc 8529754  T
Q  118 ttttcgtgctgcgagattagtttcggggaaaaaggatgagaacggtgataggggtagacaaagtctttatattgcttgcaacagtgattttgataagttt 217  Q
    |||||||||||| ||||||||||| |||||||| || |||||| |||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||    
T  8529753 ttttcgtgctgccagattagtttcagggaaaaacgacgagaacagtgataggggtagacagagtctttatattgcttgcaacagagatattgataagttt 8529654  T
Q  218 aatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgca 290  Q
     ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  8529653 gatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgca 8529581  T

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Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 8536417 - 8536145
Alignment:
Q  18 ttggaagcaacgatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggataaaagtgacgagatcaataatgaatccaagcgccc 117  Q
    ||||||||||||||||||| || ||||  ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||    
T  8536417 ttggaagcaacgatcatgtgaaacttgtgcctatgttcaagcttcctctcagatcatttagggataaaagagaccagatcaataatgaatccaagcgacc 8536318  T
Q  118 ttttcgtgctgcgagattagtttcggggaaaaaggatgagaacggtgataggggtagacaaagtctttatattgcttgcaacagtgattttgataagttt 217  Q
    |||||||||||||||||||||||| |||||||| || |||||| || ||| |||||||||||||||||||||||||||||| || |||||||||||||||    
T  8536317 ttttcgtgctgcgagattagtttcagggaaaaacgacgagaacagttatacgggtagacaaagtctttatattgcttgcaaaagagattttgataagttt 8536218  T
Q  218 aatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgca 290  Q
     ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  8536217 gatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgca 8536145  T

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Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 9073922 - 9074200
Alignment:
Q  18 ttggaagcaacgatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggataaaagtgacgagatcaataatgaatccaagcgccc 117  Q
    ||||||||||| | |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||   |||||||| |||||||| ||| |||||    
T  9073922 ttggaagcaacaaacatgtcaagcttgagcctatattcaagcttcctctcatatcatttagggataaaagaagcgagatcagtaatgaattcaatcgccc 9074021  T
Q  118 ttttcgtgctgcgagattagtttcggggaaaaaggatgagaacggtgataggggtag-acaaa-----gtctttatattgcttgcaacagtgattttgat 211  Q
    | |||||||||| ||||||||||||||||||||  ||||||||  |||||||| ||| |||||      |  ||||| |||||||||||   ||| ||||    
T  9074022 tgttcgtgctgcaagattagtttcggggaaaaacaatgagaacattgatagggatagaacaaaccgttatagttatactgcttgcaacaaatattatgat 9074121  T
Q  212 aagtttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgca 290  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||  |  ||||||||| | |||||||||||    
T  9074122 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaacccttcagtgatctgca 9074200  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 8547439 - 8547545
Alignment:
Q  184 ttatattgcttgcaacagtgattttgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtg 283  Q
    |||||||||||||||||| |||  |||| | ||| |||||||||||||||||| ||| || |||||||||||||| |||  |  ||||||||| ||||||    
T  8547439 ttatattgcttgcaacagagatcgtgatcattttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtg 8547538  T
Q  284 atctgca 290  Q
    |||||||    
T  8547539 atctgca 8547545  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 8547327 - 8547440
Alignment:
Q  18 ttggaagcaacgatcatgtcaagcttgcacctatattcaagcttcctct------------cagatcatttagggataaaagtgacgagatcaataatga 105  Q
    ||||||||||| ||||||| |||||||  ||||||||||||||||||||            || |||||||||||| |||||||||  |||||| ||| |    
T  8547327 ttggaagcaacaatcatgtgaagcttgatcctatattcaagcttcctcttcgtggttatatcaaatcatttagggagaaaagtgacaggatcaagaataa 8547426  T
Q  106 atccaagcgccctt 119  Q
    ||||||||||||||    
T  8547427 atccaagcgccctt 8547440  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 8637801 - 8637753
Alignment:
Q  18 ttggaagcaacgatcatgtcaagcttgcacctatattcaagcttcctct 66  Q
    ||||||||||| ||||||| |||||||| |||||||| |||||||||||    
T  8637801 ttggaagcaacaatcatgtgaagcttgcgcctatatttaagcttcctct 8637753  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 8645146 - 8645098
Alignment:
Q  18 ttggaagcaacgatcatgtcaagcttgcacctatattcaagcttcctct 66  Q
    |||||||||||  || ||||||||||||||||||||| |||||||||||    
T  8645146 ttggaagcaacagtcgtgtcaagcttgcacctatatttaagcttcctct 8645098  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 2844444 - 2844513
Alignment:
Q  221 attgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgca 290  Q
    |||||||||||||||||||| || |||||||| |||||  ||| | |||||| ||| |||||||| ||||    
T  2844444 attgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgca 2844513  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 2856277 - 2856346
Alignment:
Q  221 attgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgca 290  Q
    |||||||||||||||||||| || |||||||| |||||  ||| | |||||| ||| |||||||| ||||    
T  2856277 attgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgca 2856346  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 2873887 - 2873956
Alignment:
Q  221 attgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgca 290  Q
    |||||||||||||||||||| || |||||||| |||||  ||| | |||||| ||| |||||||| ||||    
T  2873887 attgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgca 2873956  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 2873726 - 2873774
Alignment:
Q  18 ttggaagcaacgatcatgtcaagcttgcacctatattcaagcttcctct 66  Q
    ||||||||||| ||||||| |||||||  ||||||||| ||||||||||    
T  2873726 ttggaagcaacaatcatgtgaagcttgaccctatattcgagcttcctct 2873774  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 8678678 - 8678642
Alignment:
Q  30 atcatgtcaagcttgcacctatattcaagcttcctct 66  Q
    |||||||||||||||| |||||||| |||||||||||    
T  8678678 atcatgtcaagcttgcgcctatatttaagcttcctct 8678642  T

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Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 48361042 - 48361314
Alignment:
Q  18 ttggaagcaacgatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggataaaagtgacgagatcaataatgaatccaagcgccc 117  Q
    ||||||||||| | ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||    
T  48361042 ttggaagcaacaaccatgtgaagcttacacctatattcaagcttcctctcagatcatttagggataaaagagacgatatcaataatgaatccaagcaccc 48361141  T
Q  118 ttttcgtgctgcgagattagtttcggggaaaaaggatgagaacggtgataggggtagacaaagtctttatattgcttgcaacagtgattttgataagttt 217  Q
    |||||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48361142 ttttcgtgctgcaagattagtttcgggaaaaaatgatgagaacagtgataggggtagacaaagtctttatattgcttgcaacagagattttgataagttt 48361241  T
Q  218 aatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgca 290  Q
     |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||||    
T  48361242 gatattgtgaattcttgcaatggtttactttgtttgtctgatccatctttgggaaacccgttagtgatctgca 48361314  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 35780548 - 35780498
Alignment:
Q  215 tttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatat 265  Q
    ||||||||||| ||||||||||||||||| |||||||||||| | ||||||    
T  35780548 tttaatattgtcaattcttgcaatggtttgctttgtttgtctaatccatat 35780498  T

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Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 9444014 - 9443742
Alignment:
Q  18 ttggaagcaacgatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggataaaagtgacgagatcaataatgaatccaagcgccc 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||    
T  9444014 ttggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggataaaagagaccagatcaatattgaatccaagcgccc 9443915  T
Q  118 ttttcgtgctgcgagattagtttcggggaaaaaggatgagaacggtgataggggtagacaaagtctttatattgcttgcaacagtgattttgataagttt 217  Q
    |||||||||||| ||||||||||| ||||||||  | || ||| |||||||||||||||| ||||||||||||| ||||||||| ||| |||||||||||    
T  9443914 ttttcgtgctgccagattagtttcagggaaaaacaacgacaacagtgataggggtagacagagtctttatattgattgcaacagagatattgataagttt 9443815  T
Q  218 aatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgca 290  Q
     ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  9443814 gatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgca 9443742  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 16717133 - 16717058
Alignment:
Q  183 tttatattgcttgcaacagtgattttgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctga 258  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||| || ||||| || || |||||||||||    
T  16717133 tttatattgctggcaacagtgatcgtgataagtttaatattgtgaattcatgtaatggcttgctatgtttgtctga 16717058  T

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Target: scaffold0627 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 5434 - 5328
Alignment:
Q  184 ttatattgcttgcaacagtgattttgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtg 283  Q
    ||||||||||||||| || |||   ||||| |||| |||||||||||| || ||||| || || ||||||||| | |||  |  ||||||||| ||||||    
T  5434 ttatattgcttgcaatagagatcgcgataattttagtattgtgaattcctgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtg 5335  T
Q  284 atctgca 290  Q
    |||||||    
T  5334 atctgca 5328  T

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