View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21213_low_43 (Length: 309)
Name: NF21213_low_43
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_43 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 32910049 - 32909766
Alignment:
| Q |
19 |
aatacctcgtaaccaacgagatgaggaaattaacatggttctctacctaaatgtgtaagctatatttaaggtcgtcactggaattttaagtattatatag |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
32910049 |
aatacctcgtaaccaacgagatgagaaaattaacatggttctctacctaaatgtgtaagctatatttaagatcgtcactgaaattttaagtattatatag |
32909950 |
T |
|
| Q |
119 |
gttgtttggaaccactggattttccacccaacgcacatttactagaagcnnnnnnntttgtcttataaaattcatggtgatatttacatagggacacacg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32909949 |
gttgtttggaaccactggattttccacccaacgcacatttactagaagcaaaaaaatttgtcttataaaattcatggtgatatttacatagggacacacg |
32909850 |
T |
|
| Q |
219 |
aatgtatgatcaaaccccaatccaaacaaacaattatacaaacttagacaatagtatctttaaataaaacaaacatcccctatg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32909849 |
aatgtatgatcaaaccccaatccaaacaaacaattatacaaacttagacaatagtatctttaaataaaacaaacatcccctatg |
32909766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University