View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_45 (Length: 298)
Name: NF21213_low_45
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 141 - 268
Target Start/End: Original strand, 27841551 - 27841678
Alignment:
| Q |
141 |
aacaattatttgaccaatttccatatgaaaatgctagtaatcccgttctttattcacatcccttttcattcttcaattcaattgttttgacnnnnnnnta |
240 |
Q |
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| T |
27841551 |
aacaattatttgaccaatttccatatgaaaatgctagtaatcccattctttattcacatcccttttcattcttcaattcaattgttttgacaaaaaaata |
27841650 |
T |
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| Q |
241 |
tacaactaaacatgttgcaatgaattgg |
268 |
Q |
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| T |
27841651 |
tacaactaaacatgttgcaatgaattgg |
27841678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 27841391 - 27841486
Alignment:
| Q |
48 |
ggccttttgttaacattttatggggtcttctgattgcagccatggagaagataaagaaaggccccaaaacaaaagagtttgccctactagtcgaac |
143 |
Q |
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| T |
27841391 |
ggccttttgttaacattttatggggtcttctgattgcagccatggagaagataaagaaaggccccaaaacaaaagagtttgccctattagtcgaac |
27841486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 27841362 - 27841390
Alignment:
| Q |
1 |
cttcttcttgcattctcttctctgaaatc |
29 |
Q |
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| T |
27841362 |
cttcttcttgcattctcttctctgaaatc |
27841390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 2741297 - 2741189
Alignment:
| Q |
11 |
cattctcttctctgaaatctccatatcaaccatcgctggccttttgttaacattttatggggtcttctgattgcagccatggagaagataaagaaaggcc |
110 |
Q |
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| T |
2741297 |
cattctcttctttgaaacctccataacaaccatcgttggccttttgttaacattttatgggtacttttgattacagccatggagaagataaggaaaggcc |
2741198 |
T |
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| Q |
111 |
ccaaaacaa |
119 |
Q |
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| T |
2741197 |
ccaaaacaa |
2741189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 2741112 - 2741070
Alignment:
| Q |
141 |
aacaattatttgaccaatttccatatgaaaatgctagtaatcc |
183 |
Q |
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| T |
2741112 |
aacaattatttgaccaatttccatatgaatatgctagtaatcc |
2741070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 48189338 - 48189250
Alignment:
| Q |
142 |
acaattatttgaccaatttccatatgaaaatgctagtaatcccgttctttattcacatcccttttcattcttcaattcaattgttttgac |
231 |
Q |
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| T |
48189338 |
acaattatttgaccaatttccataagaaaatgctagtaatcc-gttctttgttcacatcccttttcattcttcaatttaattgttttgac |
48189250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 48190493 - 48190385
Alignment:
| Q |
11 |
cattctcttctctgaaatctccatatcaaccatcgctggccttttgttaacattttatggggt-cttctgattgcagccatggagaagataaagaaaggc |
109 |
Q |
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| T |
48190493 |
cattctcttgtctgaaacctccataacaaccgtcgttggccttttgttaaca-tttatggggtacttttgattacacccatggagaagataaggaaaggc |
48190395 |
T |
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| Q |
110 |
cccaaaacaa |
119 |
Q |
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|||||||||| |
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| T |
48190394 |
cccaaaacaa |
48190385 |
T |
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