View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_47 (Length: 292)
Name: NF21213_low_47
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 51037185 - 51037445
Alignment:
| Q |
16 |
atgagcaatgagtgaagcagtgaaaatgcggtataataacctcaagcaatggacgcagagattctttatgcgaatttgtactgtgaaggaaaacaactgc |
115 |
Q |
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| T |
51037185 |
atgagcaatgagtgaagcagtgaaaatgcggtataataacctcaagcaatggacgcagagattctttatgcgaatttgtactgtgaaggaaaacaactgc |
51037284 |
T |
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| Q |
116 |
aggtcttcttgtctgcttatcgctttccttcaagctcaaaatcaatacaggcagccatccttgatcaccttcgctcaaaatcaataaatataattattct |
215 |
Q |
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| T |
51037285 |
aggtcttcttgtctgcttatcgctttccttcaagctcaaaatcaatacaggcagccatccttgatcaccttcgctcaaaatcaataaatataattattct |
51037384 |
T |
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| Q |
216 |
ctagatattagatacaatactaatcatactagttagttagactaattactaattagttagt |
276 |
Q |
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| T |
51037385 |
ctagatattagatacaatactaatcatactagttagttagactaattactaattagttagt |
51037445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 53 - 187
Target Start/End: Original strand, 51045122 - 51045256
Alignment:
| Q |
53 |
aacctcaagcaatggacgcagagattctttatgcgaatttgtactgtgaaggaaaacaactgcaggtcttcttgtctgcttatcgctttccttcaagctc |
152 |
Q |
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|||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51045122 |
aacctcaagcaacggacgcagatattctttatacttgtttgtactgtgaaggaaaacaactgcaggtcttcttgtctgcttatcgctttccttcaagctc |
51045221 |
T |
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| Q |
153 |
aaaatcaatacaggcagccatccttgatcaccttc |
187 |
Q |
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| T |
51045222 |
aaaatcaacacaggcaaccgtccttgatctccttc |
51045256 |
T |
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