View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21213_low_48 (Length: 288)

Name: NF21213_low_48
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21213_low_48
NF21213_low_48
[»] chr8 (5 HSPs)
chr8 (16-187)||(43239907-43240079)
chr8 (133-187)||(79466-79520)
chr8 (109-187)||(34336211-34336295)
chr8 (29-89)||(38552011-38552072)
chr8 (155-187)||(41865503-41865535)
[»] chr7 (5 HSPs)
chr7 (111-183)||(13044333-13044406)
chr7 (16-55)||(25047389-25047428)
chr7 (109-187)||(38505160-38505244)
chr7 (29-89)||(33979277-33979338)
chr7 (109-137)||(32851670-32851698)
[»] chr5 (5 HSPs)
chr5 (29-89)||(30775253-30775314)
chr5 (20-90)||(16187211-16187282)
chr5 (141-187)||(14569904-14569950)
chr5 (29-89)||(35853964-35854025)
chr5 (155-187)||(10955557-10955589)
[»] chr1 (8 HSPs)
chr1 (22-89)||(32133914-32133982)
chr1 (111-187)||(41817123-41817199)
chr1 (16-55)||(7815330-7815369)
chr1 (30-88)||(48514879-48514938)
chr1 (145-187)||(69912-69954)
chr1 (16-89)||(39027167-39027241)
chr1 (146-187)||(14439751-14439792)
chr1 (29-65)||(28192093-28192129)
[»] chr3 (9 HSPs)
chr3 (132-187)||(47359495-47359550)
chr3 (133-187)||(27197428-27197482)
chr3 (133-187)||(34280668-34280722)
chr3 (108-187)||(517452-517532)
chr3 (132-187)||(33900560-33900615)
chr3 (20-89)||(38694437-38694507)
chr3 (158-187)||(49183866-49183895)
chr3 (158-187)||(50534978-50535007)
chr3 (139-187)||(3537387-3537435)
[»] chr2 (2 HSPs)
chr2 (114-187)||(34757787-34757856)
chr2 (139-186)||(41099967-41100014)
[»] chr6 (2 HSPs)
chr6 (109-187)||(9104767-9104846)
chr6 (133-187)||(24849395-24849449)
[»] scaffold0263 (1 HSPs)
scaffold0263 (115-186)||(5807-5884)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 43240079 - 43239907
Alignment:
Q  16 atacctgcaatgagtagggtaaaactccgctttcatggatccggacttggatctaggaattacccgcaaatttaactaggcatgggtacggggtaagact 115  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43240079 atacctgtaatgagtagggtaaaaccccgctttcatggatccggacttggatctaggaattacccgcaaatttaattaggcatgggtacggggtaagact 43239980  T
Q  116 ttgtttgggagtttgga-gggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43239979 ttgtttgagagtttggaggggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 43239907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 79466 - 79520
Alignment:
Q  133 gggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    ||||| |||||| ||||| |  || ||||||||||||||||||||||||||||||    
T  79466 gggaagggaaggctttgaggagtggaaaatatgagggaaaatggagaaatctttc 79520  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 34336295 - 34336211
Alignment:
Q  109 taagactttgtttgggagtttggaggg------aatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    |||| ||||||||| ||||||||||||      ||||||||  ||||| || || ||||||||||| ||||||||||||||||||    
T  34336295 taaggctttgtttgtgagtttggaggggaggagaatggaagactttgaggggtggaaaatatgaggaaaaatggagaaatctttc 34336211  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 38552072 - 38552011
Alignment:
Q  29 gtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaattta 89  Q
    |||||||||||| |||||||||||| ||||| ||||| | | || |||||||||||||||||    
T  38552072 gtagggtaaaaccccgctttcatgggtccgggcttgggtatgggtaattacccgcaaattta 38552011  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 41865503 - 41865535
Alignment:
Q  155 tgaaaaatatgagggaaaatggagaaatctttc 187  Q
    ||||||||||||||||||||| |||||||||||    
T  41865503 tgaaaaatatgagggaaaatgaagaaatctttc 41865535  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 13044406 - 13044333
Alignment:
Q  111 agactttgtttgggagtttgga-gggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatc 183  Q
    |||||||||||| ||||||||| ||||||| |||| || || || ||||||||||||| |||||||||||||||    
T  13044406 agactttgtttgcgagtttggaagggaatgaaaggcttcgaggggtgaaaaatatgagagaaaatggagaaatc 13044333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 25047428 - 25047389
Alignment:
Q  16 atacctgcaatgagtagggtaaaactccgctttcatggat 55  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  25047428 atacctgcaatgggtagggtaaaactccgctttcatggat 25047389  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 38505160 - 38505244
Alignment:
Q  109 taagactttgtttgggagtttggaggg------aatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    |||| ||||||||||||||||||||||      || |||||| ||||| || || ||||| ||||||||||||||||||||||||    
T  38505160 taaggctttgtttgggagtttggaggggaggggaagggaaggctttgaggggtggaaaatttgagggaaaatggagaaatctttc 38505244  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 33979338 - 33979277
Alignment:
Q  29 gtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaattta 89  Q
    ||||||||||||  ||||||||||||||||| ||||| | | || |||||||||||||||||    
T  33979338 gtagggtaaaaccacgctttcatggatccgggcttgggtatgggtaattacccgcaaattta 33979277  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 137
Target Start/End: Original strand, 32851670 - 32851698
Alignment:
Q  109 taagactttgtttgggagtttggagggaa 137  Q
    |||||||||||||||||||||||||||||    
T  32851670 taagactttgtttgggagtttggagggaa 32851698  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 30775314 - 30775253
Alignment:
Q  29 gtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaattta 89  Q
    ||||||||||||||||||||||| ||||||||||||| | | || |||||||||||||||||    
T  30775314 gtagggtaaaactccgctttcatagatccggacttgggtatgggtaattacccgcaaattta 30775253  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 16187282 - 16187211
Alignment:
Q  20 ctgcaatgagtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaatttaa 90  Q
    |||| ||| |||||||||||||||||||||||||||| ||  |||| | | || ||||||||||||||||||    
T  16187282 ctgctatgggtagggtaaaactccgctttcatggatcagggtttgggtatgggtaattacccgcaaatttaa 16187211  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 14569904 - 14569950
Alignment:
Q  141 aaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    |||| ||||| || || ||||||||||||||||||||||||||||||    
T  14569904 aaggctttgaggggtggaaaatatgagggaaaatggagaaatctttc 14569950  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 35854025 - 35853964
Alignment:
Q  29 gtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaattta 89  Q
    |||||||||||| ||| |||||||||||||| ||||| | | || |||||||||||||||||    
T  35854025 gtagggtaaaaccccgttttcatggatccgggcttgggtatgggtaattacccgcaaattta 35853964  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 10955557 - 10955589
Alignment:
Q  155 tgaaaaatatgagggaaaatggagaaatctttc 187  Q
    |||||||||||||| ||||||||||||||||||    
T  10955557 tgaaaaatatgaggaaaaatggagaaatctttc 10955589  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 32133982 - 32133914
Alignment:
Q  22 gcaatgagtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaattta 89  Q
    |||||| |||||||||||| |||||||||||| ||||||||||| | | || |||||||||||||||||    
T  32133982 gcaatgggtagggtaaaaccccgctttcatgggtccggacttgggtatgggtaattacccgcaaattta 32133914  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 41817123 - 41817199
Alignment:
Q  111 agactttgtttgggagtttggagggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    |||||||||||||||||||||||| || | |||||||||| || || ||||||| ||| ||||| |||| |||||||    
T  41817123 agactttgtttgggagtttggaggaaaggaaaggttttgaggggtgtaaaatataaggaaaaatagagagatctttc 41817199  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 7815369 - 7815330
Alignment:
Q  16 atacctgcaatgagtagggtaaaactccgctttcatggat 55  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  7815369 atacctgcaatgggtagggtaaaactccgcttttatggat 7815330  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 48514938 - 48514879
Alignment:
Q  30 tagggtaaaactccgctttcatggatccggacttggatct-aggaattacccgcaaattt 88  Q
    ||||||||||| |||||||||||||||||  ||||||| | || ||||||||||||||||    
T  48514938 tagggtaaaaccccgctttcatggatccgagcttggatatgagtaattacccgcaaattt 48514879  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 69954 - 69912
Alignment:
Q  145 ttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    |||||| || ||||||||||||||||||||| |||||||||||    
T  69954 ttttgaggggtgaaaaatatgagggaaaatgaagaaatctttc 69912  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 39027241 - 39027167
Alignment:
Q  16 atacctgcaatgagtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaattta 89  Q
    ||||| || ||| |||||||||||| |||||||||||| ||||||||||| | | || |||||| ||||||||||    
T  39027241 atacccgctatgggtagggtaaaaccccgctttcatgggtccggacttgggtatgggtaattactcgcaaattta 39027167  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 14439792 - 14439751
Alignment:
Q  146 tttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    ||||| || |||||||||||||| ||||||||||||||||||    
T  14439792 tttgaggggtgaaaaatatgaggaaaaatggagaaatctttc 14439751  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 28192093 - 28192129
Alignment:
Q  29 gtagggtaaaactccgctttcatggatccggacttgg 65  Q
    |||||||||||| |||||||||||| |||||||||||    
T  28192093 gtagggtaaaaccccgctttcatgggtccggacttgg 28192129  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 47359550 - 47359495
Alignment:
Q  132 agggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    |||||| |||||| ||||| || || ||||||||||||||||||||||||||||||    
T  47359550 agggaagggaaggctttgaggggtggaaaatatgagggaaaatggagaaatctttc 47359495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 27197482 - 27197428
Alignment:
Q  133 gggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    ||||||| |||| |||||||| ||||||||||||| ||||||||| |||||||||    
T  27197482 gggaatgaaaggctttgaagggtgaaaaatatgagagaaaatggaaaaatctttc 27197428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 34280722 - 34280668
Alignment:
Q  133 gggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    ||||| |||||| ||||| || || ||||||||||||||||||||||||||||||    
T  34280722 gggaagggaaggctttgaggggtggaaaatatgagggaaaatggagaaatctttc 34280668  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 517452 - 517532
Alignment:
Q  108 gtaagactttgtttgggagtttggaggg-aatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    ||||| |||||||||| ||||||||||| || |||||| || | ||| || ||||||| ||||||||| ||||||||||||    
T  517452 gtaaggctttgtttggtagtttggaggggaagggaaggcttgggagggtggaaaatattagggaaaattgagaaatctttc 517532  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 33900560 - 33900615
Alignment:
Q  132 agggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    |||||||| ||||||||||||| || ||||||||||| ||||| ||||||| ||||    
T  33900560 agggaatgaaaggttttgaagggtgcaaaatatgaggaaaaatagagaaatttttc 33900615  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 38694437 - 38694507
Alignment:
Q  20 ctgcaatgagtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaattta 89  Q
    |||| ||| ||||| ||||||||||||||||||| ||||| ||||| | | || |||||||||||||||||    
T  38694437 ctgcgatgggtaggataaaactccgctttcatgggtccgggcttgggtatgggtaattacccgcaaattta 38694507  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 187
Target Start/End: Complemental strand, 49183895 - 49183866
Alignment:
Q  158 aaaatatgagggaaaatggagaaatctttc 187  Q
    ||||||||||||||||||||||||||||||    
T  49183895 aaaatatgagggaaaatggagaaatctttc 49183866  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 50534978 - 50535007
Alignment:
Q  158 aaaatatgagggaaaatggagaaatctttc 187  Q
    ||||||||||||||||||||||||||||||    
T  50534978 aaaatatgagggaaaatggagaaatctttc 50535007  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 3537435 - 3537387
Alignment:
Q  139 ggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    |||||| ||||| || || |||||||||||||||||| |||||||||||    
T  3537435 ggaaggctttgaggggtggaaaatatgagggaaaatgaagaaatctttc 3537387  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 34757856 - 34757787
Alignment:
Q  114 ctttgtttgggagtttggagggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    ||||||||| ||||||||||||    ||||||||||| || || |||||||||| |||||| ||||||||||||    
T  34757856 ctttgtttgcgagtttggaggg----gaaggttttgaggggtggaaaatatgagagaaaattgagaaatctttc 34757787  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 41099967 - 41100014
Alignment:
Q  139 ggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatcttt 186  Q
    |||||| ||||| || ||||||||||||||||||||| ||||||||||    
T  41099967 ggaaggctttgaggggtgaaaaatatgagggaaaatgaagaaatcttt 41100014  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 9104767 - 9104846
Alignment:
Q  109 taagactttgtttgggagtttggagggaatggaagg-ttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    |||| ||||||||||||||||||| || |||| ||| ||||| ||| ||| ||| ||  |||||||||||||||||||||    
T  9104767 taaggctttgtttgggagtttggaagggatgggagggttttggaggatgagaaacatatgggaaaatggagaaatctttc 9104846  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 24849395 - 24849449
Alignment:
Q  133 gggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 187  Q
    ||||||| |||||||||| || || |||||||||||||||||  |||||||||||    
T  24849395 gggaatgaaaggttttgaggggtggaaaatatgagggaaaattaagaaatctttc 24849449  T

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Target: scaffold0263 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 5807 - 5884
Alignment:
Q  115 tttgtttgggagtttggagggaat------ggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatcttt 186  Q
    |||||||||||||||||||||||       |||||  ||||| || || |||||||||||||||||||||||||||||    
T  5807 tttgtttgggagtttggagggaagaggaagggaagactttgaggggtggaaaatatgagggaaaatggagaaatcttt 5884  T

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