View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_5 (Length: 695)
Name: NF21213_low_5
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 412 - 651
Target Start/End: Original strand, 49767202 - 49767440
Alignment:
| Q |
412 |
ttggtttggttgatgagaaagtagtagataggtagattttgctttatgtaatagattgtgttgtactttgtgttagggactgtcttgaatgccttttagc |
511 |
Q |
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| T |
49767202 |
ttggtttggttgatgagaaagtagtagataggtagattttgctttatgtaatagattgtgttgtactttgtgttagggactgtcttgaatgccttttagc |
49767301 |
T |
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| Q |
512 |
tagtttagctctgttatctatctttgtgtaatttgatttgctttttacacaacacccacccacaaactcaaaaggaagtgagagagacaaagagacgcag |
611 |
Q |
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| T |
49767302 |
tagtttagctctgt-atctatctttgtgtaatttgatttgctttttacacaacacccacccacaaactcaaaaggaagtgagagagacaaagagacgcag |
49767400 |
T |
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| Q |
612 |
attagatttgataaagaagcaaacaacttagggagggaac |
651 |
Q |
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| T |
49767401 |
attagatttgataaagaagcaaacaacttagggagggaac |
49767440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 191 - 388
Target Start/End: Original strand, 49766980 - 49767177
Alignment:
| Q |
191 |
cgagtttaccaagtttttcttgaagacaaaaagcacagatcccaccagggttgtttctgtatggatgatcaatgcattgcatgccatcaatggaatcatc |
290 |
Q |
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| T |
49766980 |
cgagtttaccaagtttttcttgaagacaaaaagcacagatcccaccagggttgtttctatatggatgatcaatgcattgcatgccatcaatggaatcatc |
49767079 |
T |
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| Q |
291 |
ttcaacaccaatgttaactcttnnnnnnnnnnnnnnnnntcctttcataggttccatgtggaggatgtgaatcatccaaatctaaaataatagtatct |
388 |
Q |
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| T |
49767080 |
ttcaacaccaatgttaactcttccaccaccaccacctcctcctttcataggttccatgtggaggatgtgaatcatccaaatctaaaataatagtatct |
49767177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 49766799 - 49766881
Alignment:
| Q |
13 |
gagagagaagaagatgaagttacagcagttgtagctgatacagtgttgatg---gaagaagaagaaggacaatgacgagtagt |
92 |
Q |
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| T |
49766799 |
gagagagaagaagatgaagttacagcagttgttgctgatacagtgttgatggaagaagaagaagaaggacaatgacgagtagt |
49766881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 14137753 - 14137707
Alignment:
| Q |
193 |
agtttaccaagtttttcttgaagacaaaaagcacagatcccaccagg |
239 |
Q |
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| T |
14137753 |
agtttaccaagtttttcttgaagacaaaaagcacatataccaccagg |
14137707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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