View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21213_low_52 (Length: 271)
Name: NF21213_low_52
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_52 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 7897119 - 7897364
Alignment:
| Q |
1 |
ctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7897119 |
ctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagca |
7897218 |
T |
|
| Q |
101 |
aatcacctaaagccannnnnnnnnnnnnnagaattgtc-atgtatcatccagaaaatctcacttgaacaccatattattttattttattttgggtgtgga |
199 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
7897219 |
aatcacctaaagccatttttttcttttttagaattgtcaatgtatcatccagaaaatctcactcgaacaccata-----ttattttattttgggtgtgga |
7897313 |
T |
|
| Q |
200 |
gttggttgggttgcacaactagtttgagctgaggattaaagttgaaggccc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7897314 |
gttggttgggttgcacaactagtttgagctgaggattaaagttggaggccc |
7897364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 7035879 - 7036134
Alignment:
| Q |
1 |
ctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagca |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7035879 |
ctttcccatgaaagacacttaaaataatacagttccctccagatgaaataatatgtgacactacagcccattttaatgtatataaaccaactggtgagca |
7035978 |
T |
|
| Q |
101 |
aatcacctaaagccannnnnnnnnnnnnnagaattgtc-atgtatcatccagaaaatctcacttgaacaccata-----ttattttattttattttgggt |
194 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7035979 |
aatcacctaaagccatttttttctttttcagaattgtcaatgtatcatccagaaaatctcacttgaacaccatattattttattttattttattttgggt |
7036078 |
T |
|
| Q |
195 |
gtggagttggttgggttgcacaactagtttgagctgaggattaaagttgaaggccc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
7036079 |
gtggagttggttgggttgcacaactagtttgagctgaggattagagttggaggccc |
7036134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 29380357 - 29380425
Alignment:
| Q |
42 |
gatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagcaaatcacctaa |
110 |
Q |
| |
|
|||||||||||||| ||||||||| | || |||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
29380357 |
gatgaaataatatgttacactacagtctatcttaatgtacataaaccaactggttagcaaaccacctaa |
29380425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University