View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_53 (Length: 268)
Name: NF21213_low_53
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_53 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 29838570 - 29838319
Alignment:
| Q |
17 |
cacagaagaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacacgatttgcaagcatttaccaatcattttgtagtattac |
116 |
Q |
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| T |
29838570 |
cacagaagaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacgcgatttgcaagcatttaccaatctttttgtagtattac |
29838471 |
T |
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| Q |
117 |
ttggtacataccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgacatcaaa |
216 |
Q |
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| T |
29838470 |
ttggtacataccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgacatcaaa |
29838371 |
T |
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| Q |
217 |
tgcaaaaccgacaacacctcataccaagcattagacatggttgtttcctgta |
268 |
Q |
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| T |
29838370 |
tgcaaaaccgacaacacctcataccaagcattagacatggttgtttcctgta |
29838319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 266
Target Start/End: Original strand, 34628143 - 34628284
Alignment:
| Q |
125 |
taccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgacatcaaatgcaaaac |
224 |
Q |
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|||| ||||||||| | |||||||||| || |||||| ||||||||| || | |||||||||| ||| || ||||| ||| |||||| ||||| || |
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| T |
34628143 |
taccttctgatacttttggctgatgaccatcggtggatgttcttggaagaagtaataaattagcctgtgatagcaatagtgttgccatcaagtgcaagac |
34628242 |
T |
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| Q |
225 |
cgacaacacctcataccaagcattagacatggttgtttcctg |
266 |
Q |
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| T |
34628243 |
tgacaacacttcataccaagcattagacatggctgtttcctg |
34628284 |
T |
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