View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_54 (Length: 267)
Name: NF21213_low_54
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 42523261 - 42523013
Alignment:
| Q |
1 |
ggtgtatttccaatctccttcatcaccttctaatacnnnnnnnggttctatcttcgccttattgaaacgttcatattcatctgatctcaggggaagagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42523261 |
ggtgtatttccaatctccttcatcaccttctaatactttttttggttccttcttcgccttattgaaacgttcatattcatctgatctcaggggaagagtt |
42523162 |
T |
|
| Q |
101 |
gcatgctagttgccggggatgtttatagacctgctgctatcgaccagcttactatcttgggtaaacaggtaccagatttttgtttcattgaagttgttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42523161 |
gcatgctagttgccggggatgtttatagacctgctgctatcgaccagcttactatcttgggtaaacaggtaccagatttttgtttcattgaagttgttaa |
42523062 |
T |
|
| Q |
201 |
caagtttcaatttctttaatgatacatacaccacatttaaatatagtca |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42523061 |
caagtttcaatttctttaatgatacatacaccacatttaaatatagtca |
42523013 |
T |
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