View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21213_low_55 (Length: 266)

Name: NF21213_low_55
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21213_low_55
NF21213_low_55
[»] chr1 (2 HSPs)
chr1 (4-266)||(9581948-9582210)
chr1 (16-136)||(9587518-9587638)
[»] chr5 (1 HSPs)
chr5 (88-137)||(29022133-29022182)
[»] chr4 (5 HSPs)
chr4 (82-129)||(533098-533145)
chr4 (8-54)||(548271-548317)
chr4 (76-137)||(645434-645495)
chr4 (85-126)||(6007763-6007804)
chr4 (85-129)||(1547373-1547417)
[»] chr8 (1 HSPs)
chr8 (87-132)||(17642611-17642656)
[»] chr7 (1 HSPs)
chr7 (76-137)||(15091276-15091337)
[»] chr2 (1 HSPs)
chr2 (77-118)||(13641998-13642039)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 266
Target Start/End: Original strand, 9581948 - 9582210
Alignment:
Q  4 accgttggtaatggagagtaactgtttggagacaacagaaagagacttcaaatagaaaccatggttggcatcgttgtcgtcgatgaggaatttgaagacg 103  Q
    ||||||||| || ||||| |||||||||||||| |||||||||||||| || |||||||||| ||||   ||||||||||| ||||||||||||||||||    
T  9581948 accgttggtgatagagagaaactgtttggagacgacagaaagagacttgaagtagaaaccattgttgatgtcgttgtcgtcaatgaggaatttgaagacg 9582047  T
Q  104 gattcccaacactcgttaggtaaataaaaatctgttggtggaaccgccattgtgttttttcttcttctttttgagtcactagacattgatatttttctaa 203  Q
    ||||||||||| || |||||||||||||||||||||| || ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||     
T  9582048 gattcccaacagtcattaggtaaataaaaatctgttgctgcaaccgccattgcgtttcttcttcttctttttgagtcactagacattgatatttttctat 9582147  T
Q  204 aaggagtcatcggtgactgaaccttactattgtttgagatagcagagaggttgtgtgactgcc 266  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  9582148 aaggagtcatcgatgactgaaccttacaattgtttgagatagcagagaggttgtgtggctgcc 9582210  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 9587518 - 9587638
Alignment:
Q  16 ggagagtaactgtttggagacaacagaaagagacttcaaatagaaaccatggttggcatcgttgtcgtcgatgaggaatttgaagacggattcccaacac 115  Q
    |||||| |||||||||||||| |||||||||||||| || |||| ||||| |||| | |||||| |||| |||| |||||||||||| ||||||||||      
T  9587518 ggagagaaactgtttggagacgacagaaagagacttgaagtagacaccatcgttgacgtcgttgccgtctatgaagaatttgaagacagattcccaacgg 9587617  T
Q  116 tcgttaggtaaataaaaatct 136  Q
    || || |||||| ||||||||    
T  9587618 tcattgggtaaagaaaaatct 9587638  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 29022133 - 29022182
Alignment:
Q  88 gaggaatttgaagacggattcccaacactcgttaggtaaataaaaatctg 137  Q
    |||||||||||||| | ||||||||||||||| ||||||||||| |||||    
T  29022133 gaggaatttgaagatgcattcccaacactcgtcaggtaaataaagatctg 29022182  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 533098 - 533145
Alignment:
Q  82 gtcgatgaggaatttgaagacggattcccaacactcgttaggtaaata 129  Q
    |||||||| |||||||||||| ||||||||||||||||  ||||||||    
T  533098 gtcgatgacgaatttgaagacagattcccaacactcgtcgggtaaata 533145  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 548271 - 548317
Alignment:
Q  8 ttggtaatggagagtaactgtttggagacaacagaaagagacttcaa 54  Q
    ||||| |||||||| |||||||| ||||||||||| |||||||||||    
T  548271 ttggtgatggagagaaactgttttgagacaacagagagagacttcaa 548317  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 645434 - 645495
Alignment:
Q  76 gttgtcgtcgatgaggaatttgaagacggattcccaacactcgttaggtaaataaaaatctg 137  Q
    |||||||| |||||||||| |||||||  || ||||||| || | |||||||||||||||||    
T  645434 gttgtcgttgatgaggaatctgaagacacatacccaacaatcataaggtaaataaaaatctg 645495  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 6007763 - 6007804
Alignment:
Q  85 gatgaggaatttgaagacggattcccaacactcgttaggtaa 126  Q
    |||||||||||||||||  ||||||||||| |||||||||||    
T  6007763 gatgaggaatttgaagatagattcccaacattcgttaggtaa 6007804  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 1547417 - 1547373
Alignment:
Q  85 gatgaggaatttgaagacggattcccaacactcgttaggtaaata 129  Q
    ||||| |||||||||||  |||||||||||||||| |||||||||    
T  1547417 gatgatgaatttgaagatagattcccaacactcgtcaggtaaata 1547373  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 17642656 - 17642611
Alignment:
Q  87 tgaggaatttgaagacggattcccaacactcgttaggtaaataaaa 132  Q
    |||||||||||||||| || ||||||||||| | ||||||||||||    
T  17642656 tgaggaatttgaagacagactcccaacactcatcaggtaaataaaa 17642611  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 15091337 - 15091276
Alignment:
Q  76 gttgtcgtcgatgaggaatttgaagacggattcccaacactcgttaggtaaataaaaatctg 137  Q
    |||||||| ||||| |||| |||||||| ||||||||||||| |  |||||||| |||||||    
T  15091337 gttgtcgttgatgatgaatctgaagacgcattcccaacactcatcgggtaaatagaaatctg 15091276  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 13641998 - 13642039
Alignment:
Q  77 ttgtcgtcgatgaggaatttgaagacggattcccaacactcg 118  Q
    ||||||| |||||| ||||||||||| |||||||||||||||    
T  13641998 ttgtcgtggatgagaaatttgaagaccgattcccaacactcg 13642039  T

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