View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_56 (Length: 265)
Name: NF21213_low_56
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 34629213 - 34628954
Alignment:
| Q |
1 |
tgctacaatctctccttctctccccatgcttttttcctctcaaaactttcactaaactcattttgtccatagcagatgcaaaagcttgaaaaaacttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34629213 |
tgctacaatctctccttctctccccatgcttttttcctctcacaactttcactaaactcattttgtccatagcagatgcaaaagcttgaaaaaacttttg |
34629114 |
T |
|
| Q |
101 |
tttatcctttgcaaaatcttgaaccagtgacttggttcgtggatccaaagccaaagcttggtcagatgctagcaaccccatcttgttctgcaagttacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34629113 |
tttatcctttgcaaaatcttgaaccagtgacttggttcgtggatccaaagccaaagcttggtcagatgctagcaaccccatcttgttctgcaagttacca |
34629014 |
T |
|
| Q |
201 |
taatatgcatggtcaaatatgaaaggagtagttgcatcaaatggggcaacaatgtctgtg |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34629013 |
taatatgcatggtcaaatatgaaaggagtagttgcatcaaatggggcaacaatgtctgtg |
34628954 |
T |
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