View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_6 (Length: 616)
Name: NF21213_low_6
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 20 - 604
Target Start/End: Complemental strand, 46712215 - 46711637
Alignment:
| Q |
20 |
ataggaacaccaggagcatttctaattaagaataatcatcacagtgagttctacctaaaaagcttgaaacttcataatgttcctggccaaggtgttattc |
119 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46712215 |
ataggaacaccaggagcattcctaattaagaataatcatcacagtgagttctacctaaaaagcttgaaacttcaaaatgttcctggccaaggtgttattc |
46712116 |
T |
|
| Q |
120 |
actttatatgcaactcttgggtatacccttctcaaaaatatcaaaaggatcgcattttcttcagcaacaaggtacactttcaaataatccccttaaatct |
219 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||| |
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| T |
46712115 |
actttacatgcaactcttgggtttacccttctcaaaaatatcaaaaggatcgcattttcttcagcaacaaggtatatt---aaacaatccccttaaatct |
46712019 |
T |
|
| Q |
220 |
tagtccattaagtgcatgtttgttacatattctaagaattagtagggacaattaatcaatatatattgttaatgtgttgtagacatactttctaagtgaa |
319 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46712018 |
tagtacattaagtgcatgtttgttacatattctaagaattag---ggacaattaatcaatatatattgttaatgtgttgtagacatactttctaagtgaa |
46711922 |
T |
|
| Q |
320 |
acaccagctccacttcttaagtatagagaagaagaacttgaaaccttaagaggctctggagataacatccaactgaaagaatgggacagggtttatgatt |
419 |
Q |
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| T |
46711921 |
acaccagctccacttcttaagtatagagaagaagaacttgaaaccttaagaggctctggagatagcatccaactgaaagaatgggacagggtttatgatt |
46711822 |
T |
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| Q |
420 |
atgcatactataatgatttggcggatcctgataaaggtccgaaatatgttcgtccagttcttggagggtccagtgaatatccttaccctcgcaggggaag |
519 |
Q |
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| T |
46711821 |
atgcatactataatgatttggcggatcctgataaaggtccgaaatatgttcgtccagttcttggagggtccagtgaatatccttaccctcgcaggggaag |
46711722 |
T |
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| Q |
520 |
aactaatagaccacccgcaaagtcaggttcggcttttccacaatgatcaccagtttaataattatttactcgcaattaatatatt |
604 |
Q |
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| T |
46711721 |
aactaatagaccacccgcaaagtcaggttcggcttttccacaatgatcaccagtttaataattatttactcgcaattaatatatt |
46711637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 36923179 - 36923352
Alignment:
| Q |
20 |
ataggaacaccaggagcatttctaattaagaataatcatcacagtgagttctacctaaaaagcttgaaacttcataatgttcctggccaaggtgttattc |
119 |
Q |
| |
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||||||||||||||||||||| |||| |||||||||| ||| |||||||||||| |||||||||| |||| | |||||||| |||| |||||| | |
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| T |
36923179 |
ataggaacaccaggagcatttttaatatggaataatcatgacaatgagttctacctcaaaagcttgacacttaaaggcgttcctggtcaagatgttatcc |
36923278 |
T |
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| Q |
120 |
actttatatgcaactcttgggtatacccttctcaaaaatatcaaaaggatcgcattttcttcagcaacaaggta |
193 |
Q |
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| T |
36923279 |
actttgtctgcaactcttgggtatatcctgctaaaaactacgtaaaagatcgcattttcttctccaacaaggta |
36923352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 401 - 523
Target Start/End: Original strand, 36923552 - 36923674
Alignment:
| Q |
401 |
tgggacagggtttatgattatgcatactataatgatttggcggatcctgataaaggtccgaaatatgttcgtccagttcttggagggtccagtgaatatc |
500 |
Q |
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||||| ||||||||||||||||||| ||| |||||||||| ||||||||||||||| || || |||||| ||||||||||||| |||||||| |
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| T |
36923552 |
tgggatagggtttatgattatgcatgctacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatc |
36923651 |
T |
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| Q |
501 |
cttaccctcgcaggggaagaact |
523 |
Q |
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| T |
36923652 |
cttaccctcgcaggggaagaact |
36923674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 331
Target Start/End: Complemental strand, 6371444 - 6371410
Alignment:
| Q |
297 |
tgtagacatactttctaagtgaaacaccagctcca |
331 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
6371444 |
tgtagacataccttctaagtgaaacaccagctcca |
6371410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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