View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_61 (Length: 250)
Name: NF21213_low_61
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 40385926 - 40386145
Alignment:
| Q |
22 |
ggtttgaagctaattctttctgcttgctgcaaatatgtgtgagttcaatttcttccacttcaattctcttctttatttgtttcatataatgctcaacaaa |
121 |
Q |
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| T |
40385926 |
ggtttcaacctaattctttctgcttgctgcaaatatgtgtgagttcaatttctttcacttaaactctcttctttatttgtttcatataatgctcaacaaa |
40386025 |
T |
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| Q |
122 |
agtataatcataactctgaatttttattttatcataagttaatctacaaacaaaactgaaactatgctgatttatatgtttctattaataaaattttgca |
221 |
Q |
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| T |
40386026 |
agtaaaatcataactctgaa-ttttattttgtcataagttaatctataaacaaagctgaaactatgctgatttatatgtttctattaataaaattttgca |
40386124 |
T |
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| Q |
222 |
gctggaagaaaaccctatgct |
242 |
Q |
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||||||||||||||||||||| |
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| T |
40386125 |
gctggaagaaaaccctatgct |
40386145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 40375680 - 40375900
Alignment:
| Q |
23 |
gtttgaagctaattctttctgcttgctgcaaatatgtgtgagttcaatttcttccacttcaattctcttctttatttgtttcatataatgctcaacaaaa |
122 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| | || |
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| T |
40375680 |
gtttcaagctaattctttctgcttgctgcaaacatgtgtgagttcaatttctttcacttcaactcttttctttatttgtttcatataatgctcaaaagaa |
40375779 |
T |
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| Q |
123 |
gtataatcataactctgaa-tttttattttatcataagttaatctacaaacaaaactgaaactatgctgatttatatgtttctattaataaaattttgca |
221 |
Q |
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| T |
40375780 |
gtaaaagcataactctgaattttttattttgtcataagttaatctataaacaaagctgaaattatgctgatttagatgtttctattaatataaatttgca |
40375879 |
T |
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| Q |
222 |
gctggaagaaaaccctatgct |
242 |
Q |
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| T |
40375880 |
gcaggaaaaaacccctatgct |
40375900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 40332698 - 40332785
Alignment:
| Q |
37 |
ctttctgcttgctgcaaatatgtgtgagttcaatttcttccacttcaattctcttctttatttgtttcatataatgctcaacaaaagt |
124 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40332698 |
ctttctgcttgctgcaattatgtgtgagttcaatttctatcacttcaattctcttctttatttgtttcatatgatgctcaacaaaagt |
40332785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 40332782 - 40332867
Alignment:
| Q |
157 |
aagttaatctacaaacaaaactgaaactatgctgatttatatgtttctattaataaaattttgcagctggaagaaaaccctatgct |
242 |
Q |
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| T |
40332782 |
aagtcaatctataaacaaagttgaaactatgctgatttagatgtttctgttaatataattttgcagctggaaaaaaaccttatgct |
40332867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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