View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_66 (Length: 240)
Name: NF21213_low_66
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_66 |
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| [»] chr7 (7 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 47299004 - 47299226
Alignment:
| Q |
18 |
cacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgcagtggtg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47299004 |
cacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggtttccacaaagcttccttgcagtggtg |
47299103 |
T |
|
| Q |
118 |
acggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgta |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47299104 |
acggccgctgggtaagcaaaacagttaccgtagtatccaacaagtggcgaattgttaacattaaacctcgagcgtgcattggcgatgcacatcattcgta |
47299203 |
T |
|
| Q |
218 |
cctcttcatctgcctctaactgc |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
47299204 |
cctcttcatctgcctctaactgc |
47299226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 47292397 - 47292619
Alignment:
| Q |
18 |
cacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgcagtggtg |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| |
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| T |
47292397 |
cacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataaccaaatggatttccacaaagcttccctgcagtggtg |
47292496 |
T |
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| Q |
118 |
acggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgta |
217 |
Q |
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| T |
47292497 |
acggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaattgttaatgttaaacctcgagcgtgcattgacgacgcacatcattcgta |
47292596 |
T |
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| Q |
218 |
cctcttcatctgcctctaactgc |
240 |
Q |
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|||||| ||| |||||||||||| |
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| T |
47292597 |
cctctttatccgcctctaactgc |
47292619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 47267850 - 47267629
Alignment:
| Q |
19 |
acagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgcagtggtga |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||||||||||| ||||||||||| |
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| T |
47267850 |
acagaatgcatatattcctctgtaacttcagcttttaattttcttaccaactccacagcataacctaatgagtttccacaaagcttccctgcagtggtga |
47267751 |
T |
|
| Q |
119 |
cggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtac |
218 |
Q |
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||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| || ||||||||| | || ||||||||||||| |
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| T |
47267750 |
cggccgccgggtaagcaaaacaattaccgtagtatccaacaagtggcgaattgttagcattaaacctcgaacgtgcattgacaatacacatcattcgtat |
47267651 |
T |
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| Q |
219 |
ctcttcatctgcctctaactgc |
240 |
Q |
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||| |||||||||||||||||| |
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| T |
47267650 |
ctcgtcatctgcctctaactgc |
47267629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 47283813 - 47283594
Alignment:
| Q |
21 |
agaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacg |
120 |
Q |
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||||||||||||||| |||||||||| ||||||| |||||||| ||| |||||||||||||| || |||||| |||||||||||| ||| |||||||| |
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| T |
47283813 |
agaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcataacctaaagggtttccacaaagcttccctgcggtggtgaca |
47283714 |
T |
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| Q |
121 |
gccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacct |
220 |
Q |
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|| || ||| ||||||||||||||||||| ||||||||||||||||||| || | | |||||||||| |||||||| ||||||||||||||||||| | |
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| T |
47283713 |
gcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagccctaaaccttgaacgtgcattaacgatgcacatcattcgtactt |
47283614 |
T |
|
| Q |
221 |
cttcatctgcctctaactgc |
240 |
Q |
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||||||||| |||||||||| |
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| T |
47283613 |
cttcatctggctctaactgc |
47283594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 47279220 - 47279001
Alignment:
| Q |
21 |
agaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacg |
120 |
Q |
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||||||||||||||| |||||||||| ||||||| |||||||| ||| |||||| ||||||| || || ||| |||||||||||| ||| |||||||| |
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| T |
47279220 |
agaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactccataacctaaaggatttccacaaagcttccctgcggtggtgaca |
47279121 |
T |
|
| Q |
121 |
gccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacct |
220 |
Q |
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|| || ||| ||||||||||||||||||| ||||||||||||||||||| || | | |||||||||| |||||||| ||||||||||||||||||| | |
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| T |
47279120 |
gcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagccctaaaccttgaacgtgcattaacgatgcacatcattcgtactt |
47279021 |
T |
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| Q |
221 |
cttcatctgcctctaactgc |
240 |
Q |
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||||||||| |||||||||| |
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| T |
47279020 |
cttcatctggctctaactgc |
47279001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 47242944 - 47242725
Alignment:
| Q |
21 |
agaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacg |
120 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| |||||||| |||||||||||||||||| ||| ||||| ||||||||| | |||| |||||||| |
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| T |
47242944 |
agaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcataacctaattggtttccacaaagctcctttgcggtggtgaca |
47242845 |
T |
|
| Q |
121 |
gccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacct |
220 |
Q |
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||||| | | |||||| || ||||| || |||||||||| ||| |||| || ||||||| || |||||||| ||||||||||||||||||||| |
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| T |
47242844 |
gccgccgagaaagcaatgcaattaccgtaatatccaacaaacaaagaagggttagcactaaacctggaacgtgcattaacgatgcacatcattcgtacct |
47242745 |
T |
|
| Q |
221 |
cttcatctgcctctaactgc |
240 |
Q |
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||||||||| ||||| |||| |
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| T |
47242744 |
cttcatctggctctatctgc |
47242725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 47257067 - 47256860
Alignment:
| Q |
25 |
tgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacggccg |
124 |
Q |
| |
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|||||||| | ||||||||||| ||||||| |||||||| |||||||||||||||||| ||| ||||| ||||||||| | |||| |||||||| |||| |
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| T |
47257067 |
tgcatgtacttctctgtaacttgagcttttgcttttcttatcaactccactgcataacctaattggtttccacaaagctcctttgcggtggtgactgccg |
47256968 |
T |
|
| Q |
125 |
ctgggtaagcaaaacagttaccatagtatccaacaagtggcgaa---ttgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacctc |
221 |
Q |
| |
|
| | | |||||| |||||| ||||| ||||||| || | |||| || ||| || ||||||| ||||||||||| |||||||||||||||| || || |
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| T |
47256967 |
ccgagaaagcaatacagttgccataatatccaatgagcgacgaacggttattagcactaaacctcgagcgtgcattaacgatgcacatcattcgcacatc |
47256868 |
T |
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| Q |
222 |
ttcatctg |
229 |
Q |
| |
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|||||||| |
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| T |
47256867 |
ttcatctg |
47256860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 32731611 - 32731392
Alignment:
| Q |
21 |
agaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacg |
120 |
Q |
| |
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|||||||||||||||||||||||||| || |||| |||||||| |||||||||||||||||| ||| ||||| ||||||||| | |||| |||||||| |
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| T |
32731611 |
agaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcataacctaattggtttccacaaagctcctttgcggtggtgaca |
32731512 |
T |
|
| Q |
121 |
gccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacct |
220 |
Q |
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||||| | | |||||| ||| ||||| || ||||||| || ||| |||| || ||||||| || |||||||| ||||||||||||||||||||| |
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| T |
32731511 |
gccgccgagaaagcaatacaattaccgtaatatccaataaacaaagaagggttagcactaaacctggaacgtgcattaacgatgcacatcattcgtacct |
32731412 |
T |
|
| Q |
221 |
cttcatctgcctctaactgc |
240 |
Q |
| |
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||||||||| ||||| |||| |
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| T |
32731411 |
cttcatctggctctatctgc |
32731392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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