View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_68 (Length: 239)
Name: NF21213_low_68
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 219007 - 218782
Alignment:
| Q |
1 |
tatcttaattagaatatatgcaaaggggaacaaattgatcaggcaaacaaaacaaagcagaatatttataataagggattggaaaaatgtgtccgattct |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219007 |
tatcttaattagaatatatgcaaaggagaacaaattgat--ggcaaacaaaacaaagcagaatatttataataagggattggaaaaatgtgtccgattct |
218910 |
T |
|
| Q |
101 |
gagaatttgtttagaatggcattaggattttcgcacgacacgtgagagaataataatagtatgtcttctctagaagaagattagaagaaaaggtacgacg |
200 |
Q |
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||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
218909 |
gagaatttgttgacaatggcattaggattttcgcacgacacgagagagaataataatagtatgtcttctctagaagaagattagaagaaaaggtaccacg |
218810 |
T |
|
| Q |
201 |
gttgctttttcttacatggattgatgatg |
229 |
Q |
| |
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||||| ||||||||||||||||||||||| |
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|
| T |
218809 |
gttgc-ttttcttacatggattgatgatg |
218782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 695567 - 695342
Alignment:
| Q |
1 |
tatcttaattagaatatatgcaaaggggaacaaattgatcaggcaaacaaaacaaagcagaatatttataataagggattggaaaaatgtgtccgattct |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
695567 |
tatcttaattagaatatatgcaaaggagaacaaattgat--ggcaaacaaaacaaagcagaatatttataataagggattggaaaaatgtgtccgattct |
695470 |
T |
|
| Q |
101 |
gagaatttgtttagaatggcattaggattttcgcacgacacgtgagagaataataatagtatgtcttctctagaagaagattagaagaaaaggtacgacg |
200 |
Q |
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||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
695469 |
gagaatttgttgacaatggcattaggattttcgcacgacacgagagagaataataatagtatgtcttctctagaagaagattagaagaaaaggtaccacg |
695370 |
T |
|
| Q |
201 |
gttgctttttcttacatggattgatgatg |
229 |
Q |
| |
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||||| ||||||||||||||||||||||| |
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| T |
695369 |
gttgc-ttttcttacatggattgatgatg |
695342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 699776 - 699551
Alignment:
| Q |
1 |
tatcttaattagaatatatgcaaaggggaacaaattgatcaggcaaacaaaacaaagcagaatatttataataagggattggaaaaatgtgtccgattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
699776 |
tatcttaattagaatatatgcaaaggagaacaaattgat--ggcaaacaaaacaaagcagaatatttataataagggattggaaaaatgtgtccgattct |
699679 |
T |
|
| Q |
101 |
gagaatttgtttagaatggcattaggattttcgcacgacacgtgagagaataataatagtatgtcttctctagaagaagattagaagaaaaggtacgacg |
200 |
Q |
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||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
699678 |
gagaatttgttgacaatggcattaggattttcgcacgacacgagagagaataataatagtatgtcttctctagaagaagattagaagaaaaggtaccacg |
699579 |
T |
|
| Q |
201 |
gttgctttttcttacatggattgatgatg |
229 |
Q |
| |
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||||| ||||||||||||||||||||||| |
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|
| T |
699578 |
gttgc-ttttcttacatggattgatgatg |
699551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 732630 - 732405
Alignment:
| Q |
1 |
tatcttaattagaatatatgcaaaggggaacaaattgatcaggcaaacaaaacaaagcagaatatttataataagggattggaaaaatgtgtccgattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
732630 |
tatcttaattagaatatatgcaaaggagaacaaattgat--ggcaaacaaaacaaagcagaatatttataataagggattggaaaaatgtgtccgattct |
732533 |
T |
|
| Q |
101 |
gagaatttgtttagaatggcattaggattttcgcacgacacgtgagagaataataatagtatgtcttctctagaagaagattagaagaaaaggtacgacg |
200 |
Q |
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||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
732532 |
gagaatttgttgacaatggcattaggattttcgcacgacacgagagagaataataatagtatgtcttctctagaagaagattagaagaaaaggtaccacg |
732433 |
T |
|
| Q |
201 |
gttgctttttcttacatggattgatgatg |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
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|
| T |
732432 |
gttgc-ttttcttacatggattgatgatg |
732405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 856526 - 856301
Alignment:
| Q |
1 |
tatcttaattagaatatatgcaaaggggaacaaattgatcaggcaaacaaaacaaagcagaatatttataataagggattggaaaaatgtgtccgattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
856526 |
tatcttaattagaatatatgcaaaggagaacaaattgat--ggcaaacaaaacaaagcagaatatttataataagggattggaaaaatgtgtccgattct |
856429 |
T |
|
| Q |
101 |
gagaatttgtttagaatggcattaggattttcgcacgacacgtgagagaataataatagtatgtcttctctagaagaagattagaagaaaaggtacgacg |
200 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
856428 |
gagaatttgttgacaatggcattaggattttcgcacgacacgagagagaataataatagtatgtcttctctagaagaagattagaagaaaaggtaccacg |
856329 |
T |
|
| Q |
201 |
gttgctttttcttacatggattgatgatg |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
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|
| T |
856328 |
gttgc-ttttcttacatggattgatgatg |
856301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 221212 - 221087
Alignment:
| Q |
101 |
gagaatttgtttagaatggcattaggattttcgcacgacacgtgagagaataataatagtatgtcttctctagaagaagattagaagaaaaggtacgacg |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| || |||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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|
| T |
221212 |
gagaatttgttggcaatggcattaggattttcgcacgacgcgggaga--ataataatagttagtcttctctagaagaagattagaagaaaaggtaccacg |
221115 |
T |
|
| Q |
201 |
gttgctttttcttacatggattgatgatg |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
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|
| T |
221114 |
gttgc-ttttcttacatggattgatgatg |
221087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 690367 - 690242
Alignment:
| Q |
101 |
gagaatttgtttagaatggcattaggattttcgcacgacacgtgagagaataataatagtatgtcttctctagaagaagattagaagaaaaggtacgacg |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| || |||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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|
| T |
690367 |
gagaatttgttggcaatggcattaggattttcgcacgacgcgggaga--ataataatagttagtcttctctagaagaagattagaagaaaaggtaccacg |
690270 |
T |
|
| Q |
201 |
gttgctttttcttacatggattgatgatg |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
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|
| T |
690269 |
gttgc-ttttcttacatggattgatgatg |
690242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 734835 - 734710
Alignment:
| Q |
101 |
gagaatttgtttagaatggcattaggattttcgcacgacacgtgagagaataataatagtatgtcttctctagaagaagattagaagaaaaggtacgacg |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| || |||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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|
| T |
734835 |
gagaatttgttggcaatggcattaggattttcgcacgacgcgggaga--ataataatagttagtcttctctagaagaagattagaagaaaaggtaccacg |
734738 |
T |
|
| Q |
201 |
gttgctttttcttacatggattgatgatg |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
734737 |
gttgc-ttttcttacatggattgatgatg |
734710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 858731 - 858606
Alignment:
| Q |
101 |
gagaatttgtttagaatggcattaggattttcgcacgacacgtgagagaataataatagtatgtcttctctagaagaagattagaagaaaaggtacgacg |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| || |||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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|
| T |
858731 |
gagaatttgttggcaatggcattaggattttcgcacgacgcgggaga--ataataatagttagtcttctctagaagaagattagaagaaaaggtaccacg |
858634 |
T |
|
| Q |
201 |
gttgctttttcttacatggattgatgatg |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
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|
| T |
858633 |
gttgc-ttttcttacatggattgatgatg |
858606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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