View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_69 (Length: 237)
Name: NF21213_low_69
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 40375603 - 40375380
Alignment:
| Q |
4 |
tatcttaaggtcaacgtaagttttggttaaaaagtggccaagtggttcgtaaacattacgataagttgaacaattcaattgttccatcacattaattaca |
103 |
Q |
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| T |
40375603 |
tatcataaagtccacgtaagttttggttaaaaagtggccaagtggttcttaaacattacgatgagttgaacaattcaattgttccatcacattaattaca |
40375504 |
T |
|
| Q |
104 |
tcaact-----attaaaggaaaaacaatacaaagttgcaagtactatccactttcatttgggaaataaaataaaattctgacattgcatcccacggcatt |
198 |
Q |
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| T |
40375503 |
tcaactcaactattaaaggaaaaacaatacaaagttgcaagtactatccactttcatttgggaaataaaataaaattcagacattgcatcccacggcatt |
40375404 |
T |
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| Q |
199 |
gactaggctatataagtacataat |
222 |
Q |
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|||| ||||||||||||||||||| |
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| T |
40375403 |
gactgggctatataagtacataat |
40375380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 40385845 - 40385739
Alignment:
| Q |
4 |
tatcttaaggtcaacgtaagttttggttaaaaagtggccaagtggttcgtaaacattacgataagttgaacaattcaattgttccatcacattaattaca |
103 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||| |
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| T |
40385845 |
tatcataaggtcaacgtaagttttggttaaaaagtggccaagtggttcttaaacattacgataagttgaacaattcaattgttcccttgcattaactaca |
40385746 |
T |
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| Q |
104 |
tcaacta |
110 |
Q |
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||||||| |
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| T |
40385745 |
tcaacta |
40385739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 40364328 - 40364227
Alignment:
| Q |
119 |
aaaacaatacaaagttgcaagtactatccactttcatttgggaaataaaataaaattctgacattgcatcccacggcattgactaggctatataagtaca |
218 |
Q |
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| T |
40364328 |
aaaacaatataaagttgcaagtactatccactttcatttgggaaataaa--aatgttcagacattgcatcccacggcattgactacgctatttaagtaca |
40364231 |
T |
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| Q |
219 |
taat |
222 |
Q |
| |
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|||| |
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|
| T |
40364230 |
taat |
40364227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 40364940 - 40364843
Alignment:
| Q |
118 |
aaaaacaatacaaagttgcaagtactatccactttcatttgggaaataaaataaaattctgacattgcatcccacggcattgactaggctatataagtac |
217 |
Q |
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|||||||||| |||||||||| ||||||| |||||||||||| |||||||| | |||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
40364940 |
aaaaacaataaaaagttgcaaatactatc-actttcatttggtaaataaaa--aggttctgacattgcatcccacgacattgactaaactatataagtac |
40364844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 40365663 - 40365615
Alignment:
| Q |
119 |
aaaacaatacaaagttgcaagtactatccactttcatttgggaaataaaa |
168 |
Q |
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||||||||| |||||||||||||| ||| ||||||||||||||||||||| |
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| T |
40365663 |
aaaacaatataaagttgcaagtacaatc-actttcatttgggaaataaaa |
40365615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 40332411 - 40332369
Alignment:
| Q |
68 |
gttgaacaattcaattgttccatcacattaattacatcaacta |
110 |
Q |
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| T |
40332411 |
gttgaacaattcaattgttccctcacatcaatcacatcaacta |
40332369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 40383200 - 40383132
Alignment:
| Q |
122 |
acaatacaaagttgcaagtac-tatccactttcatttgggaaataaaataaaattctgacattgcatccca |
191 |
Q |
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|||||| |||||||||||||| |||| |||||||||| || ||||||| |||||||| ||||||||||||| |
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| T |
40383200 |
acaatagaaagttgcaagtacgtatc-actttcatttaggtaataaaa-aaaattctaacattgcatccca |
40383132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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