View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_71 (Length: 237)
Name: NF21213_low_71
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31612978 - 31612757
Alignment:
| Q |
1 |
agtacaccactgagcacaataagttgataattgttgctaaaaccaaacgtgtacgtgttactggtgaatgaatcacgtccaccagagatcctgtcactgc |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
31612978 |
agtacaccactgagcacaataagttgatgattgttgctaaaaccaaacgtgtacgtgttactggtgaacgaatcacatccaccagagatcctgtcactgc |
31612879 |
T |
|
| Q |
101 |
atctttgtcatccatattgttattacatgatgatggttcttcgtcgagtgtgagaaaaactctgtgtggaaggtggttgccattagaggtagctatagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31612878 |
atctttgtcatccatattgttattacatgatgatggttcttcgtcgagtgtgagaaaaactctgtgtggaaggtggttgccattagaggtagctatagtg |
31612779 |
T |
|
| Q |
201 |
gacatgatgttcatggcttctt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
31612778 |
gacatgatgttcatggcttctt |
31612757 |
T |
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