View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_76 (Length: 235)
Name: NF21213_low_76
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 48697316 - 48697097
Alignment:
| Q |
1 |
agttactatttacatacatcactgaccttggaagaatcaagcttagtaaacttttttgaaatnnnnnnngtcgtgtgatggctgtgaacctaacaattca |
100 |
Q |
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| T |
48697316 |
agttactatttacatacatcactgaccttggaagaatcaagcttagtaaacttttttgaaataaaaaaagtcgtgtgatggctgtgaacctaacaattca |
48697217 |
T |
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| Q |
101 |
aatacctagttcaaggaacgcatgggctagtgattnnnnnnntggtcaattgaattgagattggatgttaaggtttatggattccttaatgaacttaaat |
200 |
Q |
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| T |
48697216 |
aatacctagttcagggaacgcatgggttagtga-taaaaaaatggtcaattgaattgagattggatgttaaggtttatggattccttaaagaacttaaat |
48697118 |
T |
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| Q |
201 |
tcttcaataataggtgtatgt |
221 |
Q |
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| T |
48697117 |
tcttcaataataggtatatgt |
48697097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 48700178 - 48700114
Alignment:
| Q |
147 |
caattgaattgagattggatgttaaggtttatggattccttaatgaacttaaattcttcaataat |
211 |
Q |
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|||||| ||| || ||||||||||||||||| ||||||||| | || |||||||| |||||||| |
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| T |
48700178 |
caattgtattaagtttggatgttaaggtttagggattcctttaacaagttaaattcctcaataat |
48700114 |
T |
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