View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_8 (Length: 613)
Name: NF21213_low_8
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 14 - 594
Target Start/End: Complemental strand, 3988748 - 3988164
Alignment:
| Q |
14 |
aaatgaaagtttacattaggtagtgccaaa-gtcaattatgagttgtgtaatttatgcacaaatgaacgaaaaaagaaaacatgccaaatcaaatgaaag |
112 |
Q |
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| T |
3988748 |
aaatgaaagtttacattaggtagtgtcaaaagtcaattatgagttgtgtaatttatgcacaaatgaacgaaaaaagaaaacatgccaaatcaaatgaaag |
3988649 |
T |
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| Q |
113 |
tttgtattggcaggtggcacttggcagtactagtaccttcgaggcaaacctctgttcttgtatagcattctgcagctgcagatttattcctagcattcaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3988648 |
tttgtattggcaggtggcacttggcagtactagtaccttcgaggcaaacctctgttcttgtatagcattctgcagctgcagatttattcctagcattcaa |
3988549 |
T |
|
| Q |
213 |
ctgcaagttttattaaaataaaataaaattggagtttttaggagcctaaattagtgtggtgacatatcaaataaatgcaactgcattttatgtgttatat |
312 |
Q |
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| T |
3988548 |
ctgcaagttttattaaaataaaataaaattggagtttttaggagcctaaattagtgtggtgacatatcaaataaatgcagctgcattttatgtgttatat |
3988449 |
T |
|
| Q |
313 |
tttaaatcagaagcttggattatgcttaacattttgtgagttnnnnnnnttcttgggtcaaccatatacaaaacaaagataattttaccagtgaaaagct |
412 |
Q |
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| T |
3988448 |
tttaaatcagaagcttggattatgcttaacattttgtgagttaaaaaaattcatgggtcaaccatatacaaaacaaagataattttaccagtgaaaagct |
3988349 |
T |
|
| Q |
413 |
taaatgtctaatcaaatttgacacttataattgatacacttccttcagatatgagccattatacataataaggaatccccatcactggcaggaggtagat |
512 |
Q |
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| T |
3988348 |
taaatgtctaatcaaatttgacacttataattgatacacttccttcagatatgagccattatacataataaggaatccccatcactggcaggaggtagat |
3988249 |
T |
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| Q |
513 |
ggaacagagggatcatt---ttctgtggtatatatccatcgaatgtcattattgggaacaatggagttagcttgaccaagatctt |
594 |
Q |
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| T |
3988248 |
ggaacagagggatcatttccttctgtggtatatatccatcgaatgtcattattgggaacaatgcagttagcttgaccaagatctt |
3988164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 3988769 - 3988737
Alignment:
| Q |
83 |
aaaaagaaaacatgccaaatcaaatgaaagttt |
115 |
Q |
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| T |
3988769 |
aaaaagaaaacatgccaaatcaaatgaaagttt |
3988737 |
T |
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