View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_low_80 (Length: 227)
Name: NF21213_low_80
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_low_80 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33966681 - 33966445
Alignment:
| Q |
1 |
agtgaaagaactaagaaggggtttagtagcaacatccacacgtgtggtagacacgttcgaattaaatgtcgtaatgctgcagaaagaaatcgataaggaa |
100 |
Q |
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| T |
33966681 |
agtgaaagaactaagaaggggtttagtagcaacatccacacgtgtggtagacacgttcgaattaaatgtcgtaatgctgcagaaagaaatcgataaggaa |
33966582 |
T |
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| Q |
101 |
gatatttatgaagccgaactgaaccaaaaccaatccactgaatgaacaaaatctccatttcccgctatcaactatctagttccacttaagcatagc---- |
196 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33966581 |
gatatttatgaagccgaactcaaccaaaaccaatccactgaatgaacaaaatctccatttcccgctatcaactatctagttccacttaagcatagcatag |
33966482 |
T |
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| Q |
197 |
------atagttagggttttctcttttcttacaaaaa |
227 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
33966481 |
catagcatagttagggttttctcttttcttacaaaaa |
33966445 |
T |
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