View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21214_high_16 (Length: 209)
Name: NF21214_high_16
Description: NF21214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21214_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 35940376 - 35940200
Alignment:
| Q |
17 |
caaaggtttccatggatttagcatcctcaggaatgagttgatggagaaggcacacaaaagaaacatattgaccacgattgagagagtctccaacaaacat |
116 |
Q |
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| T |
35940376 |
caaaggtttccatggatttagcatcctcgggaatgagttgatggagaaggcacacaaaagaaacatattgaccacgattgagagagtctccaacaaacat |
35940277 |
T |
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| Q |
117 |
catcctctttccacggagtgtttcaagcatcaagctagcattgaatctgcatttttgtcacacaaaaatcatctttt |
193 |
Q |
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| T |
35940276 |
catcctctttccacggagtgtttcaagcatcaagctagcattgaatctgcatttttgtcacacaaaaatcatctttt |
35940200 |
T |
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Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 32181637 - 32181483
Alignment:
| Q |
11 |
gagaagcaaaggtttccatggatttagcatcctcaggaatgagttgatggagaaggcacacaaaagaaacatattgaccacgattgagagagtctccaac |
110 |
Q |
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||||| ||||||||||||| ||||| |||| | |||||||| ||||||||||| || | ||||| ||||| ||||| |||||||||||||| || || |
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| T |
32181637 |
gagaatcaaaggtttccatcgatttggcatgttggggaatgagatgatggagaagacatatcaaagagacatactgaccccgattgagagagtccccgac |
32181538 |
T |
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| Q |
111 |
aaacatcatcctctttccacggagtgtttcaagcatcaagctagcattgaatctg |
165 |
Q |
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| T |
32181537 |
aaacatcatcctcttcccacgaagtgtttctagcattaagctggcattgaatctg |
32181483 |
T |
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