View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21214_high_5 (Length: 267)
Name: NF21214_high_5
Description: NF21214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21214_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 3 - 254
Target Start/End: Complemental strand, 47077090 - 47076839
Alignment:
| Q |
3 |
taaatttcagagtgatcctatggttgtagtctatgcaaagaaaggagatggaagattggaagaattaggacgcactgaagtcataccaaattctttgaat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47077090 |
taaatttcagagtgatcctatggttgtagtctatgcaaagaaaggagatggaagattggaagaattaggacgcactgaagtcataccaaattctttgaat |
47076991 |
T |
|
| Q |
103 |
ccagaatggatagaaaaaattagtattgcatttcattttgagatggtgcaaccacttgtgtaagttatcctccatctatctttcatgtgcctattcctgc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47076990 |
ccagaatggatagaaaaaattagtattgcatttcattttgagatggtgcaaccacttgtgtaagttatcctccatctatctttcatgtgcctattcctac |
47076891 |
T |
|
| Q |
203 |
ataaatgctgtgctttgtttatagatatagcaatgagatttatgaggcttct |
254 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47076890 |
ataaatgatgtgctttgtttatagatatagcaatgagatttatgaggcttct |
47076839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 179
Target Start/End: Complemental strand, 47059023 - 47058892
Alignment:
| Q |
48 |
agatggaagattggaagaattaggacgcactgaagtcataccaaattctttgaatccagaatggatagaaaaaattagtattgcatttcattttgagatg |
147 |
Q |
| |
|
|||||| | ||| |||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
47059023 |
agatgggaaatttgaagaattaggaagcactgaagtcataacgaattgtttgaatccagaatggatagaaaaaattaacattgcatttcatttcgagatt |
47058924 |
T |
|
| Q |
148 |
gtgcaaccacttgtgtaagttatcctccatct |
179 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| |
|
|
| T |
47058923 |
gtgcaaccacttgtgtaagctatccttcatct |
47058892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 166
Target Start/End: Original strand, 18229140 - 18229302
Alignment:
| Q |
4 |
aaatttcagagtgatcctatggttgtagtctatgcaaagaaaggagatggaagattggaagaattaggacgcactgaagtcataccaaattctttgaatc |
103 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||||||||||||||| || | ||||||||||||||||||||||||||||||| | || ||| |||| |
|
|
| T |
18229140 |
aaatttcagagtgatcctatggctgtggtatatgcaaagaaaggagacggcaaattggaagaattaggacgcactgaagtcataacgaacagtttaaatc |
18229239 |
T |
|
| Q |
104 |
cagaatggatagaaaaaattagtattgcatttcattttgagatggtgcaaccacttgtgtaag |
166 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
18229240 |
cagaatggatagagaaaattaatattgcatttcatttcgagattgtgcaaccacttgtgtaag |
18229302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University