View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21214_low_1 (Length: 697)

Name: NF21214_low_1
Description: NF21214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21214_low_1
NF21214_low_1
[»] chr5 (18 HSPs)
chr5 (155-688)||(7649736-7650268)
chr5 (360-689)||(14616428-14616756)
chr5 (369-688)||(34405767-34406086)
chr5 (23-157)||(7649513-7649647)
chr5 (486-688)||(22159663-22159867)
chr5 (369-682)||(33575013-33575326)
chr5 (460-688)||(15532298-15532528)
chr5 (460-688)||(15542480-15542710)
chr5 (458-688)||(26712437-26712669)
chr5 (458-688)||(26982175-26982407)
chr5 (369-448)||(21680634-21680713)
chr5 (373-448)||(33921372-33921447)
chr5 (369-442)||(1810198-1810272)
chr5 (369-448)||(2499770-2499850)
chr5 (489-627)||(11988991-11989133)
chr5 (368-444)||(36330999-36331075)
chr5 (623-688)||(23993320-23993385)
chr5 (374-425)||(19686465-19686517)
[»] chr7 (21 HSPs)
chr7 (361-688)||(24783327-24783654)
chr7 (369-688)||(6967066-6967385)
chr7 (369-688)||(17866361-17866680)
chr7 (469-688)||(17863202-17863421)
chr7 (361-688)||(36842937-36843264)
chr7 (369-650)||(9765758-9766038)
chr7 (460-688)||(11279410-11279639)
chr7 (564-682)||(294789-294907)
chr7 (528-688)||(46846479-46846639)
chr7 (487-682)||(23313384-23313581)
chr7 (460-688)||(36222406-36222635)
chr7 (487-688)||(3862029-3862225)
chr7 (460-682)||(23759706-23759930)
chr7 (460-688)||(33312913-33313143)
chr7 (490-677)||(23107917-23108106)
chr7 (360-448)||(17857879-17857968)
chr7 (369-448)||(3540932-3541011)
chr7 (369-448)||(6964563-6964643)
chr7 (360-444)||(28577677-28577761)
chr7 (369-448)||(38431669-38431749)
chr7 (460-519)||(294951-295008)
[»] chr1 (25 HSPs)
chr1 (361-688)||(13495906-13496232)
chr1 (369-688)||(13493181-13493500)
chr1 (369-688)||(10764838-10765157)
chr1 (369-688)||(32505865-32506181)
chr1 (361-688)||(39546161-39546486)
chr1 (487-687)||(34066264-34066466)
chr1 (486-688)||(27282230-27282434)
chr1 (368-682)||(16190186-16190499)
chr1 (541-682)||(1936551-1936691)
chr1 (555-688)||(15297251-15297383)
chr1 (574-688)||(22456705-22456818)
chr1 (574-680)||(49147825-49147930)
chr1 (567-688)||(21153174-21153295)
chr1 (369-448)||(34552446-34552525)
chr1 (371-448)||(18392669-18392747)
chr1 (361-441)||(15297492-15297572)
chr1 (253-316)||(48505874-48505937)
chr1 (487-558)||(8435284-8435357)
chr1 (385-448)||(49716647-49716710)
chr1 (385-448)||(49720129-49720192)
chr1 (369-442)||(6206164-6206237)
chr1 (641-688)||(22453415-22453462)
chr1 (635-688)||(23990362-23990415)
chr1 (369-448)||(50196723-50196803)
chr1 (253-293)||(48505811-48505851)
[»] chr6 (24 HSPs)
chr6 (369-688)||(14790537-14790856)
chr6 (369-688)||(14795565-14795884)
chr6 (357-688)||(1838393-1838724)
chr6 (505-682)||(32704398-32704575)
chr6 (368-688)||(19664673-19664991)
chr6 (486-688)||(20527285-20527490)
chr6 (368-688)||(15534975-15535293)
chr6 (360-632)||(27649077-27649347)
chr6 (489-688)||(16883594-16883795)
chr6 (369-627)||(32427281-32427536)
chr6 (460-688)||(13017287-13017517)
chr6 (574-688)||(12980705-12980818)
chr6 (472-688)||(30978321-30978539)
chr6 (567-688)||(7769594-7769715)
chr6 (574-687)||(12983592-12983704)
chr6 (368-599)||(15540578-15540807)
chr6 (369-688)||(22221642-22221959)
chr6 (369-688)||(22247477-22247794)
chr6 (489-558)||(11183962-11184033)
chr6 (616-666)||(15540529-15540579)
chr6 (369-442)||(33678949-33679025)
chr6 (254-361)||(32090663-32090777)
chr6 (385-448)||(11411039-11411102)
chr6 (374-425)||(34502636-34502688)
[»] chr4 (16 HSPs)
chr4 (369-688)||(647211-647530)
chr4 (369-688)||(650483-650802)
chr4 (368-688)||(26062697-26063020)
chr4 (572-688)||(26060506-26060622)
chr4 (487-688)||(2541803-2542005)
chr4 (359-448)||(15851450-15851539)
chr4 (460-688)||(12171901-12172119)
chr4 (376-444)||(21217350-21217418)
chr4 (487-549)||(11649329-11649393)
chr4 (369-448)||(19929155-19929234)
chr4 (236-317)||(52628956-52629036)
chr4 (572-624)||(11649444-11649496)
chr4 (253-309)||(31979285-31979341)
chr4 (369-448)||(33400083-33400163)
chr4 (160-226)||(31980626-31980692)
chr4 (487-549)||(26060668-26060732)
[»] chr2 (17 HSPs)
chr2 (361-688)||(23673345-23673671)
chr2 (360-688)||(36326845-36327172)
chr2 (359-688)||(16294817-16295145)
chr2 (369-688)||(32575693-32576013)
chr2 (460-638)||(40017948-40018126)
chr2 (460-688)||(31626468-31626698)
chr2 (460-688)||(31528307-31528537)
chr2 (460-682)||(13709995-13710218)
chr2 (369-448)||(24384933-24385014)
chr2 (385-448)||(29436025-29436088)
chr2 (369-436)||(38315809-38315876)
chr2 (253-303)||(40927916-40927966)
chr2 (253-309)||(27409395-27409451)
chr2 (374-425)||(1503204-1503256)
chr2 (374-425)||(1506408-1506460)
chr2 (572-688)||(8427144-8427259)
chr2 (389-437)||(13572070-13572118)
[»] chr3 (17 HSPs)
chr3 (361-688)||(13979405-13979730)
chr3 (572-687)||(46731414-46731529)
chr3 (460-688)||(39563607-39563837)
chr3 (272-361)||(35091823-35091912)
chr3 (160-270)||(35091672-35091783)
chr3 (460-688)||(22626410-22626638)
chr3 (361-448)||(46731612-46731699)
chr3 (460-688)||(11138668-11138896)
chr3 (567-688)||(47412101-47412222)
chr3 (369-448)||(27055149-27055228)
chr3 (369-448)||(19869255-19869335)
chr3 (370-444)||(26822048-26822122)
chr3 (487-558)||(50096829-50096902)
chr3 (595-688)||(35366295-35366387)
chr3 (487-547)||(20536459-20536520)
chr3 (375-448)||(25492175-25492249)
chr3 (374-425)||(18883509-18883561)
[»] chr8 (12 HSPs)
chr8 (369-682)||(12575308-12575620)
chr8 (370-627)||(14418445-14418698)
chr8 (487-688)||(41778866-41779068)
chr8 (528-682)||(13096946-13097099)
chr8 (369-448)||(39659720-39659799)
chr8 (369-448)||(9467341-9467421)
chr8 (487-549)||(41836318-41836382)
chr8 (369-448)||(453863-453943)
chr8 (572-624)||(41836433-41836485)
chr8 (567-657)||(44008245-44008335)
chr8 (384-448)||(13332365-13332429)
chr8 (370-404)||(22173710-22173744)
[»] scaffold0363 (1 HSPs)
scaffold0363 (370-627)||(20-273)
[»] scaffold0440 (1 HSPs)
scaffold0440 (460-688)||(9781-10010)
[»] scaffold0567 (1 HSPs)
scaffold0567 (550-682)||(5999-6131)
[»] scaffold0352 (2 HSPs)
scaffold0352 (572-688)||(2814-2930)
scaffold0352 (368-448)||(2626-2706)
[»] scaffold0264 (1 HSPs)
scaffold0264 (369-688)||(24193-24510)
[»] scaffold0068 (1 HSPs)
scaffold0068 (369-448)||(33738-33817)
[»] scaffold0273 (1 HSPs)
scaffold0273 (369-448)||(19517-19596)
[»] scaffold0063 (1 HSPs)
scaffold0063 (601-682)||(7232-7313)
[»] scaffold0500 (1 HSPs)
scaffold0500 (601-659)||(2641-2699)
[»] scaffold0766 (1 HSPs)
scaffold0766 (361-448)||(3664-3748)
[»] scaffold0126 (1 HSPs)
scaffold0126 (370-404)||(14094-14128)
[»] scaffold0084 (2 HSPs)
scaffold0084 (370-404)||(19593-19627)
scaffold0084 (370-404)||(29672-29706)


Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 155 - 688
Target Start/End: Original strand, 7649736 - 7650268
Alignment:
Q  155 gtgagtttcattaaaatctaattttctcacactaatcacaatactcgttaatctcacttaaagattttaagctagttgatcaaattcacacatgtaagaa 254  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  7649736 gtgagtttcattaaaatctaattttctcacactaatcacaatacccgttaatcgcacgtaaagattttaagctagttgatcaaattcacacatgtaagaa 7649835  T
Q  255 cacaacaacaaaaagggaaaatcaatcggggtttcaattctcattctattgcatgccaatttctaattgctaattccaatttccttttattataattaga 354  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7649836 cacaacaacaaaaaggaaaaatcaatcggggtttcaattatcattctattgcatgccaatttctaattgctaattccaatttccttttattataattaga 7649935  T
Q  355 acctaatgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnn 454  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||          
T  7649936 acctaatgatagagatttgacaagtgaaccaaaactatcgaagtaataaataaattcgtattcacgaggaccgttgttaatttctactcaacaa-tttct 7650034  T
Q  455 nnatcaaaaaggatgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaat 554  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7650035 ttatcaaaaaggatgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttgcttttaagaat 7650134  T
Q  555 attaaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgataga 654  Q
    |||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  7650135 attagagagaagtatggttaagacatttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgattatctagtttaaagataga 7650234  T
Q  655 ttaacaaagtaattatacccaatctctttaccta 688  Q
    ||||||| |||||| ||| |||||||||||||||    
T  7650235 ttaacaaggtaattctactcaatctctttaccta 7650268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 360 - 689
Target Start/End: Original strand, 14616428 - 14616756
Alignment:
Q  360 atgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatc 459  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||        |||    
T  14616428 atgatagagatttggcaagtgaaccaaaactatcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcggcaatttcttt-atc 14616526  T
Q  460 aaaaaggatgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaa 559  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  14616527 aaaaaggatgtatgaatttatattgattaccctaggaagttgagttgttttgtaacataaacgtaaataaaacaataaaagttgattttaagaatattag 14616626  T
Q  560 agataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaac 659  Q
    ||| ||||||| |||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||    
T  14616627 agagaagtatggttaagacctttgaatcctccgaagttctcctatggtaattttcactcctaattcaatcaatgattatctagtttaacgacagattaac 14616726  T
Q  660 aaagtaattatacccaatctctttacctat 689  Q
    ||||||||| ||||||||||||| ||||||    
T  14616727 aaagtaattctacccaatctcttgacctat 14616756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 369 - 688
Target Start/End: Complemental strand, 34406086 - 34405767
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||| ||||||| |||||||||||||||  || ||||||| ||| ||||||||||||||||||||||| ||||        |||||||||||    
T  34406086 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaaggaccgttgttaatttctactcggcaatttcttt-atcaaaaagga 34405988  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagt 567  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  34405987 tgtataaatttatattgattgccctaggcagttgagttgttgtgtaacataaacgtaaataaaacaataaaagttggttttcagaatattagagagaagt 34405888  T
Q  568 atgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaat 667  Q
    ||| ||||||||||  ||||||  |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  34405887 atggttaagaccttcaaatcctctgaagttctcctatggtaatttgcactcctaattcaagcaatgattatctagtttaacgacagattaacaaagtaat 34405788  T
Q  668 tatacccaatctctttaccta 688  Q
    | ||||||||||||| |||||    
T  34405787 tctacccaatctcttgaccta 34405767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 7649513 - 7649647
Alignment:
Q  23 tacaccttgttcaaaccagtaaatacatgtcaattagaagtaaagcagcaacatacaacaacatcataactttgtaactatttgctgcaacacaaataag 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7649513 tacaccttgttcaaaccagtaaatacatgtcaattagaagtaaagcagcaacatacaacaacatcataactttgtaactatttgctgcaacataaataag 7649612  T
Q  123 ctaatttaacatgtgactgttctcttttaggggtg 157  Q
    || ||||| |||| |||||||||||||||||||||    
T  7649613 ctgatttatcatgcgactgttctcttttaggggtg 7649647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 486 - 688
Target Start/End: Complemental strand, 22159867 - 22159663
Alignment:
Q  486 ttgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagtatgattaagacctttg 583  Q
    ||||||||||||||||  |||  |||| |||  ||||||||||||||||||||||| |||||||||||||||||| ||| || |||| ||||||||||||    
T  22159867 ttgccctaggcagttggattggtttttataaagtaaacgtaaataaaacaataaaaattggttttaagaatattagagagaaatatggttaagacctttg 22159768  T
Q  584 aatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacccaatctcttt 683  Q
    |||||| ||||||||| ||||||||| | ||||||||| |||||||||||  ||||||||| ||||||||||||||||||||| | |||||||||||||     
T  22159767 aatcctccgaagttctcctatggtaaatcgcactcctagttcaatcaatgactatctagttcaacgatagattaacaaagtaactctacccaatctcttg 22159668  T
Q  684 accta 688  Q
    |||||    
T  22159667 accta 22159663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 369 - 682
Target Start/End: Complemental strand, 33575326 - 33575013
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||||||||||  | ||||||||| |||| |||||||| ||||||||||| ||  |||| ||||| | |||||        || ||||||||    
T  33575326 atttggcaagtgaaccaaattcaatcgaagtaataaa-aaattcgttttcacgaggactgtatttaacttctatttagcaattttatt-attaaaaagga 33575229  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaacaataaa-agttggttttaagaatattaaagataa 565  Q
    ||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||  |   ||||||||||| | |||||||| |||| ||| | || ||    
T  33575228 tgtataaatttatattggt-gccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttagaaaattga-gagaa 33575131  T
Q  566 gtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaatt-caatcaatgtttatctagtttaacgatagattaacaaagt 664  Q
    ||||| ||||| |||| ||||||| ||||| ||| |||||||||||||||||||||||| ||||||||| |||| |||||| ||||  |||||||  |||    
T  33575130 gtatggttaagtccttcgaatcctccgaagctctcctatggtaatttgcactcctaattacaatcaatgattatttagtttcacgacggattaacttagt 33575031  T
Q  665 aattatacccaatctctt 682  Q
    |||| |||||||||||||    
T  33575030 aattctacccaatctctt 33575013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 460 - 688
Target Start/End: Original strand, 15532298 - 15532528
Alignment:
Q  460 aaaaaggatgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaacaataaa-agttggtttt-aagaatat 556  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||  |   ||||||||||| | |||||||| ||||| ||    
T  15532298 aaaaaggatgtataaatttatattggt-gccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaat 15532396  T
Q  557 taaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaatt-caatcaatgtttatctagtttaacgatagat 655  Q
    | | || ||||||| ||||| |||| |||||||   ||| ||| || ||||||||||||||||||| | | ||||||| |||| |||||| |||| ||||    
T  15532397 tga-gagaagtatggttaagtccttcgaatcctctaaagctctcctgtggtaatttgcactcctaaatacgatcaatgattatttagtttcacgacagat 15532495  T
Q  656 taacaaagtaattatacccaatctctttaccta 688  Q
    ||||  ||||||| ||||||||||||| |||||    
T  15532496 taacttagtaattctacccaatctcttgaccta 15532528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 460 - 688
Target Start/End: Original strand, 15542480 - 15542710
Alignment:
Q  460 aaaaaggatgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaacaataaa-agttggtttt-aagaatat 556  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||  |   ||||||||||| | |||||||| ||||| ||    
T  15542480 aaaaaggatgtataaatttatattggt-gccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaat 15542578  T
Q  557 taaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaatt-caatcaatgtttatctagtttaacgatagat 655  Q
    | | || ||||||| ||||| |||| |||||||   ||| ||| || ||||||||||||||||||| | | ||||||| |||| |||||| |||| ||||    
T  15542579 tga-gagaagtatggttaagtccttcgaatcctctaaagctctcctgtggtaatttgcactcctaaatacgatcaatgattatttagtttcacgacagat 15542677  T
Q  656 taacaaagtaattatacccaatctctttaccta 688  Q
    ||||  ||||||| ||||||||||||| |||||    
T  15542678 taacttagtaattctacccaatctcttgaccta 15542710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 458 - 688
Target Start/End: Original strand, 26712437 - 26712669
Alignment:
Q  458 tcaaaaaggatgtataaa-tttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaataaaacaa-taaaag-ttggttttaagaa 553  Q
    ||||||||||||| |||| |||||||| | |||||||| ||||||||||| |||||||||||||||  || |||||  | |||||| ||||||||| |||    
T  26712437 tcaaaaaggatgtgtaaaatttatatt-agtgccctagacagttgagttgattttgtaacataaacaaaattaaaaatagtaaaagattggtttta-gaa 26712534  T
Q  554 tattaaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatag 653  Q
     ||   ||| ||| ||| ||||| | || ||||||| ||| | ||| ||||| ||||||||||||||||||||||||||| |||| |||||| |||| ||    
T  26712535 aatctgagagaagaatggttaagtctttcgaatcctccgacgctctcctatgataatttgcactcctaattcaatcaatgattatttagtttcacgacag 26712634  T
Q  654 attaacaaagtaattatacccaatctctttaccta 688  Q
    ||||||  ||||||| ||||||||||||| |||||    
T  26712635 attaacttagtaattctacccaatctcttgaccta 26712669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 458 - 688
Target Start/End: Original strand, 26982175 - 26982407
Alignment:
Q  458 tcaaaaaggatgtataaa-tttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaataaaacaa-taaaag-ttggttttaagaa 553  Q
    ||||||||||||| |||| |||||||| | |||||||| ||||||||||| |||||||||||||||  || |||||  | |||||| ||||||||| |||    
T  26982175 tcaaaaaggatgtgtaaaatttatatt-agtgccctagacagttgagttgattttgtaacataaacaaaattaaaaatagtaaaagattggtttta-gaa 26982272  T
Q  554 tattaaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatag 653  Q
     ||   ||| ||| ||| ||||| | || ||||||| ||| | ||| ||||| ||||||||||||||||||||||||||| |||| |||||| |||| ||    
T  26982273 aatctgagagaagaatggttaagtctttcgaatcctccgacgctctcctatgataatttgcactcctaattcaatcaatgattatttagtttcacgacag 26982372  T
Q  654 attaacaaagtaattatacccaatctctttaccta 688  Q
    ||||||  ||||||| ||||||||||||| |||||    
T  26982373 attaacttagtaattctacccaatctcttgaccta 26982407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 369 - 448
Target Start/End: Complemental strand, 21680713 - 21680634
Alignment:
Q  369 atttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||||||| ||||||||||||||||||||||  || || |||| |||||||||||||||||||||||||| |||||    
T  21680713 atttggcaagtgtaccaaaactatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctacttagcaa 21680634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 373 - 448
Target Start/End: Complemental strand, 33921447 - 33921372
Alignment:
Q  373 ggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||| ||||||||||||||||||||||  || ||||||| ||||||||||||||| |||||||||| |||||    
T  33921447 ggcaagtgtaccaaaactatcgaagtagtaataaagttcgtatccacgaggaccgttgtgaatttctacttagcaa 33921372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 369 - 442
Target Start/End: Original strand, 1810198 - 1810272
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctact 442  Q
    ||||| |||||| ||||||| |||||||||||||||  || ||||||||||||||||||||||||||||||||||    
T  1810198 atttgacaagtgtaccaaaagctatcgaagtagtaataaagttcgtattcacgaggaccgttgttaatttctact 1810272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 2499770 - 2499850
Alignment:
Q  369 atttggcaagtgaaccaaaac-tatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||||||| |||||||  ||||||||||||||  || ||||||| |||||||||||||||||||||||||| |||||    
T  2499770 atttggcaagtgtaccaaaagatatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 2499850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 489 - 627
Target Start/End: Original strand, 11988991 - 11989133
Alignment:
Q  489 ccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagtatgattaagacctttgaat 586  Q
    ||||||||||||||||||  |||||||||||||||  |   ||||| ||||||| | | ||| |||| |||| ||| ||||| | |||||||||| ||||    
T  11988991 ccctaggcagttgagttgatttttgtaacataaacagattaaaaacgataaaagattgattttagaaaattagagagaagtaaggttaagaccttcgaat 11989090  T
Q  587 cctacgaagttcttctat--ggtaatttgcactcctaattcaa 627  Q
    ||| | ||||||| ||||  ||||||||||||||||| |||||    
T  11989091 cctccaaagttctcctatatggtaatttgcactcctagttcaa 11989133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 36331075 - 36330999
Alignment:
Q  368 gatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactca 444  Q
    |||||| |||||| ||| || ||||||||||| |||  ||||| | || ||||||||||||||||||||||||||||    
T  36331075 gatttgacaagtgtacctaatctatcgaagtaataataaaatttgcatccacgaggaccgttgttaatttctactca 36330999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 623 - 688
Target Start/End: Original strand, 23993320 - 23993385
Alignment:
Q  623 ttcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacccaatctctttaccta 688  Q
    |||||||||||| || |||||||||||||| |||||||||  | || ||||||||||||| |||||    
T  23993320 ttcaatcaatgtctacctagtttaacgatatattaacaaaacagttctacccaatctcttgaccta 23993385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 374 - 425
Target Start/End: Complemental strand, 19686517 - 19686465
Alignment:
Q  374 gcaagtgaaccaaaactatcgaagtagt-aaataaattcgtattcacgaggac 425  Q
    ||||||| || ||||||||||||||||| |||||| ||||||| |||||||||    
T  19686517 gcaagtgtactaaaactatcgaagtagtaaaataagttcgtatccacgaggac 19686465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 361 - 688
Target Start/End: Complemental strand, 24783654 - 24783327
Alignment:
Q  361 tgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatca 460  Q
    |||||| |||||| ||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| ||||        ||||    
T  24783654 tgatagagatttgacaagtgaaccaaaactatcgaagtaataaataaatttgtatccacgaggaccgttgttaatttctactcggcaatttcttttatca 24783555  T
Q  461 aaaaggatgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaa 560  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  24783554 aaaaggatgtataaatttatattgattgtccaaggcagttgagttgttttgtaacataaacttaaataaaacaataaaagttggttttaagaatattaga 24783455  T
Q  561 gataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaaca 660  Q
    || ||||||| |||||||||||||||||| |||||||||  ||||||||||| || ||||||||||||||||| |||||||||||||||| |||||||||    
T  24783454 gagaagtatggttaagacctttgaatcctccgaagttctcatatggtaattttcattcctaattcaatcaatgattatctagtttaacgagagattaaca 24783355  T
Q  661 aagtaattatacccaatctctttaccta 688  Q
    |||||||||||||||||||||| |||||    
T  24783354 aagtaattatacccaatctcttgaccta 24783327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 369 - 688
Target Start/End: Complemental strand, 6967385 - 6967066
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||| ||||||| |||||||||||||||  || ||||||| ||||||||||||||||||||||||||| ||||        |||||||||||    
T  6967385 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttcttt-atcaaaaagga 6967287  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagt 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  6967286 tgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttcagaatattagagagaagt 6967187  T
Q  568 atgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaat 667  Q
    ||| |||||||||| |||||||  |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  6967186 atggttaagaccttcgaatcctctgaagttctcctatggtaatttgcactcctaattcaagcaatgattatctagtttaacgatagattaacaaagtaat 6967087  T
Q  668 tatacccaatctctttaccta 688  Q
    | ||||||||||||| |||||    
T  6967086 tctacccaatctcttaaccta 6967066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 369 - 688
Target Start/End: Original strand, 17866361 - 17866680
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||| ||||||| |||||||||||||||  || ||||||| ||||||||||||||||||||||||||| ||||        |||||||||||    
T  17866361 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttcttt-atcaaaaagga 17866459  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagt 567  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  17866460 tgtataaatttatattgattgccctaggcagttgagctgttttgtaacataaacgtaaataaaacaataaaagttggttttcagaatattagagagaagt 17866559  T
Q  568 atgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaat 667  Q
    ||| || ||||||| |||||||  |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  17866560 atggtttagaccttcgaatcctctgaagttctcctatggtaatttgcactcctaattcaagcaatgattatctagtttaacgacagattaacaaagtaat 17866659  T
Q  668 tatacccaatctctttaccta 688  Q
    | ||||||||||||| |||||    
T  17866660 tctacccaatctcttgaccta 17866680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 469 - 688
Target Start/End: Original strand, 17863202 - 17863421
Alignment:
Q  469 gtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagta 568  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||    
T  17863202 gtataaatttatattgattgccctaggcagttgagctgttttgtaacataaacgtaaataaaacaataaaagttggttttcagaatattagagagaagta 17863301  T
Q  569 tgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaatt 668  Q
    || |||||||||| |||||||  |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||    
T  17863302 tggttaagaccttcgaatcctctgaagttctcctatggtaatttgcactcctaattcaagcaatgattatctagtttaacgacagattaacaaagtaatt 17863401  T
Q  669 atacccaatctctttaccta 688  Q
     ||||||||||||| |||||    
T  17863402 ctacccaatctcttgaccta 17863421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 361 - 688
Target Start/End: Original strand, 36842937 - 36843264
Alignment:
Q  361 tgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatca 460  Q
    |||||| ||||||||||||||||||||| |||||||||| |||||||  ||| || ||| ||||||||||||||||||||||||||||        |||     
T  36842937 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataagatcgaatccacaaggaccgttgttaatttctactcagcaatttcgtt-atcg 36843035  T
Q  461 aaaaggatgtataaatttatattgattgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatatta 558  Q
    ||| |||||||| || ||  || | ||||||||||||||||  |||  |||| |||  ||||||||||||||||||||||||||||||||| ||||||||    
T  36843036 aaa-ggatgtattaaattcaatggtttgccctaggcagttggattggtttttataaagtaaacgtaaataaaacaataaaagttggttttatgaatatta 36843134  T
Q  559 aagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaa 658  Q
     ||| ||||||| |||||||||| ||||||| ||||||||| ||||||||||| ||||||||| ||||||||||| |||||||||| ||||| |||||||    
T  36843135 gagagaagtatggttaagaccttcgaatcctccgaagttctcctatggtaattcgcactcctacttcaatcaatgattatctagttcaacgacagattaa 36843234  T
Q  659 caaagtaattatacccaatctctttaccta 688  Q
    |||| ||| | ||||||||||||| |||||    
T  36843235 caaattaactctacccaatctcttgaccta 36843264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 369 - 650
Target Start/End: Complemental strand, 9766038 - 9765758
Alignment:
Q  369 atttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaaggat 468  Q
    ||||||||||| ||||||||||||||||||| |||||||  ||| || ||  ||| |||||||||||||||||||||||         ||| ||||||||    
T  9766038 atttggcaagttaaccaaaactatcgaagtaataaataagatcgaatccataagggccgttgttaatttctactcagca-ttttctttatcgaaaaggat 9765940  T
Q  469 gtat-aaatttatattgattgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataa 565  Q
    |||| |||||| |   | ||||||||||||||||  |||  |||| |||  ||||| ||||||||| |||||||||||||||||||||||||| ||| ||    
T  9765939 gtattaaatttct---ggttgccctaggcagttggattggtttttataaagtaaacataaataaaataataaaagttggttttaagaatattagagagaa 9765843  T
Q  566 gtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacga 650  Q
    ||||| |||||||||| |||||||  |||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| ||||    
T  9765842 gtatggttaagaccttcgaatcctctgaagttctcctatggtaatttgcactcctaattcaagcaatgattatctagtttcacga 9765758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 460 - 688
Target Start/End: Complemental strand, 11279639 - 11279410
Alignment:
Q  460 aaaaaggatgtataaa-tttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaataaaac-aataaaagttggttttaagaatat 556  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||  |   ||||| ||||||  |||||||| |||| ||    
T  11279639 aaaaaggatgtataaaatttatattggt-gccctaggcagttgagttgattttgtaacataaactgattaaaaacgaataaagattggtttttagaagat 11279541  T
Q  557 taaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagatt 656  Q
    | | || ||||||| ||||| |||| ||||| | ||||||||| || |||||||||||||||||| |||||| |||| |||| |||||| |||| |||||    
T  11279540 tga-gagaagtatggttaagtccttcgaatctttcgaagttctcctctggtaatttgcactcctagttcaataaatgattatttagtttcacgacagatt 11279442  T
Q  657 aacaaagtaattatacccaatctctttaccta 688  Q
    |||  ||||||| ||||||||||||| |||||    
T  11279441 aacttagtaattctacccaatctcttgaccta 11279410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 564 - 682
Target Start/End: Complemental strand, 294907 - 294789
Alignment:
Q  564 aagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaag 663  Q
    ||||||| ||||| | || ||||||| ||||||||| ||||||||||||||||||||||| ||||||||| ||||||| || ||||| ||||||||||||    
T  294907 aagtatggttaagtctttcgaatcctccgaagttctcctatggtaatttgcactcctaatgcaatcaatgattatctaattcaacgacagattaacaaag 294808  T
Q  664 taattatacccaatctctt 682  Q
    |||||||||||||||||||    
T  294807 taattatacccaatctctt 294789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 528 - 688
Target Start/End: Original strand, 46846479 - 46846639
Alignment:
Q  528 aaaacaataaaag-ttggttttaagaatattaaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattca 626  Q
    ||||||||||||| |||||||| |||| ||| | || ||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  46846479 aaaacaataaaagattggtttttagaaaattga-gagaagtatggttaagtccttcgaatcctccgaagttcttctatggtaatttgcactcctagttca 46846577  T
Q  627 atcaatgtttatctagtttaacgatagattaacaaagtaattatacccaatctctttaccta 688  Q
    ||||||| |||| |||||| |||| ||||||||  | ||||| ||||||||||||| |||||    
T  46846578 atcaatgattatttagtttcacgacagattaacctaataattctacccaatctcttgaccta 46846639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 487 - 682
Target Start/End: Original strand, 23313384 - 23313581
Alignment:
Q  487 tgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaag-ttggttttaagaatattaaagataagtatgattaagacctttg 583  Q
    ||||||||| |||||| |||  |||||||||||||||| |   |||||||||||||  ||||||| |||| |||| ||| ||||||| ||||||||||||    
T  23313384 tgccctaggtagttgaattgatttttgtaacataaacgaattaaaaacaataaaagaatggtttt-agaaaattagagagaagtatggttaagacctttg 23313482  T
Q  584 aatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacccaatctctt 682  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||| ||||| |||||||| || || | | |||||||  |||| | |||||||||||||    
T  23313483 aatcctccgaagttctcctatggtaatttgcactactaattcaaacaatgattatctaggttcacaacatattaacactgtaactctacccaatctctt 23313581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 460 - 688
Target Start/End: Original strand, 36222406 - 36222635
Alignment:
Q  460 aaaaaggatgtataaa-tttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaataaaacaataaaag-ttggttttaagaatat 556  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||| |||| ||||||||||  |   |||||||  |||| |||||||| |||| ||    
T  36222406 aaaaaggatgtataaaatttatattggt-gccctaggcagttgagttgattttctaacataaactgattaaaaacaaagaaagattggtttttagaagat 36222504  T
Q  557 taaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagatt 656  Q
    | | || ||||||| ||||| |||| ||||||| ||||||||| |||||||||||| |||||||| ||||||||||| |||| |||||| || | | |||    
T  36222505 tga-gagaagtatggttaagtccttcgaatcctccgaagttctcctatggtaattttcactcctagttcaatcaatgattatttagtttcactacaaatt 36222603  T
Q  657 aacaaagtaattatacccaatctctttaccta 688  Q
    |||  ||||||| |||| |||||||| |||||    
T  36222604 aacttagtaattttacctaatctcttgaccta 36222635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 487 - 688
Target Start/End: Original strand, 3862029 - 3862225
Alignment:
Q  487 tgccctaggcagttgagttg---ttttgtaacataaacgtaaataaaacaataaaag-ttggttttaagaatattaaagataagtatgattaagaccttt 582  Q
    |||||||||||||| | |||   |||||||||||||||  |   ||||||||||||| |||||||||  || |||| ||| ||||||||||||||||||     
T  3862029 tgccctaggcagttcaattgattttttgtaacataaactgattaaaaacaataaaagattggttttataaa-attagagagaagtatgattaagaccttc 3862127  T
Q  583 gaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacccaatctctt 682  Q
    ||||||| ||||||||| |||||        ||||||||||||||  |||| |||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  3862128 gaatccttcgaagttctcctatg--------cactcctaattcaagaaatgattatctagttcaacgacagattaacaaagtaattctacccaatctctt 3862219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 460 - 682
Target Start/End: Original strand, 23759706 - 23759930
Alignment:
Q  460 aaaaaggatgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaacaataaa-agttggtttt-aagaatat 556  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||  |   ||||||||||| | |||||||| ||||| ||    
T  23759706 aaaaaggatgtataaatttatattggt-gccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaat 23759804  T
Q  557 taaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcct-aattcaatcaatgtttatctagtttaacgatagat 655  Q
      | || ||||||| ||||| |||| ||||||| | ||| ||| |||||||||||||||||||| ||| | ||||||| |||| |||||| ||||  |||    
T  23759805 cga-gagaagtatggttaagtccttcgaatcctccaaagctctcctatggtaatttgcactcctaaatacgatcaatgattatttagtttcacgacggat 23759903  T
Q  656 taacaaagtaattatacccaatctctt 682  Q
    ||||  ||||||| |||||||||||||    
T  23759904 taacttagtaattctacccaatctctt 23759930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 460 - 688
Target Start/End: Complemental strand, 33313143 - 33312913
Alignment:
Q  460 aaaaaggatgtataaa-tttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaataaaac-aataaaag-ttggttttaagaata 555  Q
    ||||||||||| |||| ||||||||| | ||||||||||||||||||| |||||||||||||||| || |||||  |||||| | ||||||||| ||| |    
T  33313143 aaaaaggatgtgtaaaatttatattggt-gccctaggcagttgagttgattttgtaacataaacggaattaaaaataataaaggattggtttta-gaaaa 33313046  T
Q  556 ttaaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagat 655  Q
    |   ||| ||  ||| ||||| |||| |||||||  |||| ||| ||||||||||||||  ||||||||||||||||| |||| |||||| ||||   ||    
T  33313045 tctgagagaaaaatggttaagtccttcgaatcctctgaagctctcctatggtaatttgctttcctaattcaatcaatgattatttagtttcacgacgaat 33312946  T
Q  656 taacaaagtaattatacccaatctctttaccta 688  Q
    ||||  ||||||| |||||||||| || |||||    
T  33312945 taacttagtaattctacccaatcttttgaccta 33312913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 490 - 677
Target Start/End: Complemental strand, 23108106 - 23107917
Alignment:
Q  490 cctaggcagttgagttgtt--ttgtaacataaacgtaaataaaacaataaaag-ttggttttaagaatattaaagataagtatgattaagacctttgaat 586  Q
    ||||| ||||||||||| |  |||||||||||||| |   ||||||||||||| ||||||||| ||| |||| ||| || | || |||||||||| ||||    
T  23108106 cctagacagttgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttta-gaaaattagagagaaatgtggttaagaccttcgaat 23108008  T
Q  587 cctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacccaat 677  Q
    | | ||||| ||| ||||||||||||||||||||| ||||| ||||| |||| |||||| || | ||||||||  ||||| | ||||||||    
T  23108007 catccgaagctctcctatggtaatttgcactcctagttcaaacaatgattatttagtttcacaacagattaacttagtaactctacccaat 23107917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 360 - 448
Target Start/End: Original strand, 17857879 - 17857968
Alignment:
Q  360 atgatagggatttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||  |||||||||||| ||||||| |||||||| ||||||  || ||||||| ||||||||||||||||||||||||||| ||||    
T  17857879 atgatagatatttggcaagtgtaccaaaagctatcgaaatagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaa 17857968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 3540932 - 3541011
Alignment:
Q  369 atttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||||||| |||||||||||| |||||||||  || ||||||| ||||||||||||||| || ||||||| |||||    
T  3540932 atttggcaagtgtaccaaaactatcaaagtagtaataaagttcgtatccacgaggaccgttgtgaacttctacttagcaa 3541011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 369 - 448
Target Start/End: Complemental strand, 6964643 - 6964563
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||| ||||| ||||||| |||||||||||||||  || ||||||| ||||||| |||||||||||||||||| |||||    
T  6964643 atttggtaagtgtaccaaaaactatcgaagtagtaatgaagttcgtatccacgagggccgttgttaatttctacttagcaa 6964563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 360 - 444
Target Start/End: Original strand, 28577677 - 28577761
Alignment:
Q  360 atgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactca 444  Q
    ||||||||  ||||||||||| |||||||||||||||| | |||  |||||| |||  ||||||||||||||||| |||||||||    
T  28577677 atgataggattttggcaagtgtaccaaaactatcgaagcaataatcaaattcatatctacgaggaccgttgttaacttctactca 28577761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 369 - 448
Target Start/End: Complemental strand, 38431749 - 38431669
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||| ||||| ||||||| |||||||||||||||  || ||||||| || ||||||||||||||||||||||| |||||    
T  38431749 atttggaaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccatgaggaccgttgttaatttctacttagcaa 38431669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 519
Target Start/End: Complemental strand, 295008 - 294951
Alignment:
Q  460 aaaaaggatgta-taaatttatattgattgccctaggcagttgagttgttttgtaacataa 519  Q
    |||||||||||| ||||||||||||||| |||| |||||||  ||||||||||||||||||    
T  295008 aaaaaggatgtaataaatttatattgat-gcccgaggcagt--agttgttttgtaacataa 294951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 361 - 688
Target Start/End: Complemental strand, 13496232 - 13495906
Alignment:
Q  361 tgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatca 460  Q
    |||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||        ||||    
T  13496232 tgatagagatttgacaagtgaaccaaaactatcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcggcaatttcttt-atca 13496134  T
Q  461 aaaaggatgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaa 560  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  13496133 aaaaggatgtataaatttatattgattgtcctaggcagttgaattgttttgtaacataaacgtaaataaaacaataaaagttgattttaagaatattaga 13496034  T
Q  561 gataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaaca 660  Q
    || ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| |    
T  13496033 gagaagtatggttaagacctttgaatcctccgaagttctcctatggtaatttgcactcctaattcaatcaatgattatctactttaacgacagattaaga 13495934  T
Q  661 aagtaattatacccaatctctttaccta 688  Q
    ||||||||||| |||||||||| |||||    
T  13495933 aagtaattatatccaatctcttgaccta 13495906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 369 - 688
Target Start/End: Complemental strand, 13493500 - 13493181
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||| ||||||| |||||||||||||||  || ||||||| ||||||||||||||||||||||||||| ||||        |||||||||||    
T  13493500 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttcttt-atcaaaaagga 13493402  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagt 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  13493401 tgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttcagaatattagagagaagt 13493302  T
Q  568 atgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaat 667  Q
    ||| |||||||||| |||||||  |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  13493301 atggttaagaccttcgaatcctctgaagttctcctatggtaatttgcactcctaattcaagcaatgattatctagtttaacgacagattaacaaagtaat 13493202  T
Q  668 tatacccaatctctttaccta 688  Q
    | ||||||||||||| |||||    
T  13493201 tctacccaatctcttgaccta 13493181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 369 - 688
Target Start/End: Complemental strand, 10765157 - 10764838
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||| ||||||| |||||||||||||||  || ||||||| ||||||||||||||||||||||||||| ||||        |||||||||||    
T  10765157 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttcttt-atcaaaaagga 10765059  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagt 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  10765058 tgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttcagaatattagagagaagt 10764959  T
Q  568 atgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaat 667  Q
    ||| |||||||||| |||||||  |||||||| ||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  10764958 atggttaagaccttcgaatcctctgaagttctcctatggtaacttgcactcctaattcaagcaatgattatctagtttaacgacagattaacaaagtaat 10764859  T
Q  668 tatacccaatctctttaccta 688  Q
    | ||||||||||||| |||||    
T  10764858 tctacccaatctcttgaccta 10764838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 369 - 688
Target Start/End: Original strand, 32505865 - 32506181
Alignment:
Q  369 atttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttg----ttaatttctactcagcaannnnnnnnatcaaaaa 464  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||| |||||||||| |||    |||| ||||||||  |||        ||||||||    
T  32505865 atttggcaagtgaaccaaaactatcgaagtaataaataagatcgtatccacgaggaccattgcatgttaacttctactcgacaatttcttt-atcaaaaa 32505963  T
Q  465 ggatgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagata 564  Q
    |||||||||||||||||||||| ||   |||||||||     |||| ||||||||||| |   ||||||||||||||||||||||||||||||| ||| |    
T  32505964 ggatgtataaatttatattgat-gcgtgaggcagttg-----ttttctaacataaacgaattaaaaacaataaaagttggttttaagaatattatagaga 32506057  T
Q  565 agtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagt 664  Q
    ||| || |||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||    
T  32506058 agtgtggttaagaccttcgaatcctccgaagttctcctatggtaatttgcactcctaattcaagcaatgattatctagtttaacgacagattaacaaagt 32506157  T
Q  665 aattatacccaatctctttaccta 688  Q
    |||| ||||||||||||| |||||    
T  32506158 aattctacccaatctcttgaccta 32506181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 361 - 688
Target Start/End: Complemental strand, 39546486 - 39546161
Alignment:
Q  361 tgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatca 460  Q
    |||||| ||||||||||||||||||||| ||| |||||| |||||||  |||||| |||||||||| ||||||| || ||||||||||        |||     
T  39546486 tgatagagatttggcaagtgaaccaaaattattgaagtaataaataagatcgtat-cacgaggaccattgttaacttttactcagcaatttcatt-atcg 39546389  T
Q  461 aaaaggatgtataaatttatattgattgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatatta 558  Q
    ||| |||||||| || ||  |||| ||||||||||||||||  |||  ||||||||| |||||| ||||||||||||||||||||||||||| |||||||    
T  39546388 aaa-ggatgtattaaattcaattg-ttgccctaggcagttggattggtttttgtaacgtaaacgcaaataaaacaataaaagttggttttaaaaatatta 39546291  T
Q  559 aagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaa 658  Q
     ||| ||||||| |||||||||| ||||||| |||||||||  |||||||||||||||||||||||||| ||||| ||||||||||| |||| |||||||    
T  39546290 gagagaagtatggttaagaccttcgaatcctccgaagttctcatatggtaatttgcactcctaattcaagcaatgattatctagtttcacgacagattaa 39546191  T
Q  659 caaagtaattatacccaatctctttaccta 688  Q
    |||||||| | ||||||||||||| |||||    
T  39546190 caaagtaactctacccaatctcttgaccta 39546161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 487 - 687
Target Start/End: Complemental strand, 34066466 - 34066264
Alignment:
Q  487 tgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaag-ttggttttaagaatattaaagataagtatgattaagacctttg 583  Q
    |||||||||||||||| |||  |||||||||||||||| |   ||||||||||||| ||||||||| ||| |||| ||| ||||||| |||||||||| |    
T  34066466 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattggtttta-gaaaattagagagaagtatggttaagaccttcg 34066368  T
Q  584 aatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacccaatctcttt 683  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||     
T  34066367 aatcctccgaagttctcctatgataatttgcactcctaattcaatcaatgattatctagtttaacgatagattaacaaagtaattctacccaatctcttg 34066268  T
Q  684 acct 687  Q
    ||||    
T  34066267 acct 34066264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 486 - 688
Target Start/End: Original strand, 27282230 - 27282434
Alignment:
Q  486 ttgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagtatgattaagacctttg 583  Q
    ||||||||||||||||  |||  |||| |||  |||| |||||||||||||| ||| ||||||||| |||||||| ||| ||||||| ||||||| || |    
T  27282230 ttgccctaggcagttggattggtttttataaagtaaatgtaaataaaacaattaaaattggttttatgaatattagagagaagtatggttaagactttcg 27282329  T
Q  584 aatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacccaatctcttt 683  Q
    ||| || ||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| |||||  |||||||||||||||| |||||||||||||     
T  27282330 aattctccgaagttctcctatggtaatttgcactcctaattcaagcaatgattatctagttcaacgaccgattaacaaagtaattctacccaatctcttg 27282429  T
Q  684 accta 688  Q
    |||||    
T  27282430 accta 27282434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 368 - 682
Target Start/End: Original strand, 16190186 - 16190499
Alignment:
Q  368 gatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| || ||  |||        |  | ||||||    
T  16190186 gatttgacaagtgaatcaaaactatcgaagtaataaataaattcgtatccacgaggactgttgttaatttttattcgacaaaaacgttaaa-ataaagga 16190284  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttgtt--ttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataa 565  Q
    ||||| || ||  || |  ||||||||| | |||||||| |  |||||||||||||| |   |||||||||||  ||||||||| ||| |||||||| ||    
T  16190285 tgtattaaattcaatgg--tgccctaggaaattgagttgatgtttgtaacataaacgaattaaaaacaataaagattggtttta-gaaaattaaagagaa 16190381  T
Q  566 gtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagta 665  Q
    ||||| |||||||||| ||||||| ||||||||| ||||| |||||||||||| |||||||| ||||| |||||||||||||||| | ||||||||| ||    
T  16190382 gtatggttaagaccttcgaatcctccgaagttctcctatgataatttgcactcttaattcaagcaatgattatctagtttaacgacaaattaacaaaata 16190481  T
Q  666 at-tatacccaatctctt 682  Q
    || |||||||||||||||    
T  16190482 atatatacccaatctctt 16190499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 541 - 682
Target Start/End: Complemental strand, 1936691 - 1936551
Alignment:
Q  541 ttggttttaagaatattaaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatct 640  Q
    ||||||||| ||| |||| ||| ||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  1936691 ttggtttta-gaaaattagagagaagtatggttaagaccttcgaatcctccgaagttctcctatggtaatttgcactcctagttcaatcaatgattatct 1936593  T
Q  641 agtttaacgatagattaacaaagtaattatacccaatctctt 682  Q
    || || |||| ||||||||||||||| | |||| ||||||||    
T  1936592 agcttcacgaaagattaacaaagtaactctaccaaatctctt 1936551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 555 - 688
Target Start/End: Complemental strand, 15297383 - 15297251
Alignment:
Q  555 attaaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgataga 654  Q
    |||||||| || ||||||||||||||| ||||||| ||| ||||||| | |||||||||||| || |||||||||||| || |||||||||||||| |||    
T  15297383 attaaagagaaatatgattaagaccttcgaatcctccgatgttcttccacggtaatttgcacccc-aattcaatcaatattcatctagtttaacgacaga 15297285  T
Q  655 ttaacaaagtaattatacccaatctctttaccta 688  Q
    |||||||||||||| ||||||||||||| |||||    
T  15297284 ttaacaaagtaattctacccaatctcttgaccta 15297251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 574 - 688
Target Start/End: Original strand, 22456705 - 22456818
Alignment:
Q  574 aagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacc 673  Q
    |||||||| ||||||| ||||||||| |||||| |||||| || |||| |||||||||||||  ||||||||||||| ||| ||||||||||||| ||||    
T  22456705 aagaccttcgaatcctccgaagttctcctatggaaatttgtaccccta-ttcaatcaatgttcgtctagtttaacgacagactaacaaagtaattctacc 22456803  T
Q  674 caatctctttaccta 688  Q
    ||||||||| |||||    
T  22456804 caatctcttgaccta 22456818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 574 - 680
Target Start/End: Complemental strand, 49147930 - 49147825
Alignment:
Q  574 aagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacc 673  Q
    |||||||| ||||||| ||||||||| |||||| |||||| || |||| |||||||||||||  ||||||||||||| ||||||||||||||||| ||||    
T  49147930 aagaccttcgaatcctccgaagttctcctatggaaatttgtaccccta-ttcaatcaatgttcgtctagtttaacgacagattaacaaagtaattctacc 49147832  T
Q  674 caatctc 680  Q
    |||||||    
T  49147831 caatctc 49147825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 567 - 688
Target Start/End: Complemental strand, 21153295 - 21153174
Alignment:
Q  567 tatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaa 666  Q
    |||| |||||||||| ||||||| ||| | ||||  |||||||||||||| || ||||||||||||||| || ||||||||||| ||||||||| |||||    
T  21153295 tatggttaagaccttcgaatcctccgatgctcttaaatggtaatttgcacccccaattcaatcaatgttcatttagtttaacgacagattaacacagtaa 21153196  T
Q  667 ttatacccaatctctttaccta 688  Q
    || ||| ||||||||| |||||    
T  21153195 ttctactcaatctcttgaccta 21153174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 34552446 - 34552525
Alignment:
Q  369 atttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    ||||| |||||| ||||||||||||||||||||||  || ||||||| |||||||||||||||||||||||||| |||||    
T  34552446 atttgacaagtgtaccaaaactatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 34552525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 371 - 448
Target Start/End: Complemental strand, 18392747 - 18392669
Alignment:
Q  371 ttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||||| ||||||| |||||||||||||||  || ||||||| |||||||||||||||||||||||||| |||||    
T  18392747 ttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 18392669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 361 - 441
Target Start/End: Complemental strand, 15297572 - 15297492
Alignment:
Q  361 tgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctac 441  Q
    ||||| || ||| ||||||| |||||||||||||||||||||||| ||||| ||| |||| ||||||||||||| ||||||    
T  15297572 tgataaggttttcgcaagtgtaccaaaactatcgaagtagtaaatgaattcatatccacggggaccgttgttaacttctac 15297492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 48505874 - 48505937
Alignment:
Q  253 aacacaacaacaaaaagggaaaatcaatcggggtttcaattctcattctattgcatgccaattt 316  Q
    ||||||| ||||||| ||||||||||||  ||||||||||||||||||||||||||| ||||||    
T  48505874 aacacaaaaacaaaatgggaaaatcaattagggtttcaattctcattctattgcatgtcaattt 48505937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 487 - 558
Target Start/End: Complemental strand, 8435357 - 8435284
Alignment:
Q  487 tgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatatta 558  Q
    ||||||||||||||||||||  ||||||||||||||| |||  ||||||||||||||||||||| |||| ||||    
T  8435357 tgccctaggcagttgagttgatttttgtaacataaacataataaaaacaataaaagttggtttttagaaaatta 8435284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 385 - 448
Target Start/End: Complemental strand, 49716710 - 49716647
Alignment:
Q  385 aaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    ||||||||||||||| |||  || ||||||| |||||||||||||||||||||||||| |||||    
T  49716710 aaaactatcgaagtaataataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 49716647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 385 - 448
Target Start/End: Complemental strand, 49720192 - 49720129
Alignment:
Q  385 aaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    ||||||||||||||| |||  || ||||||| |||||||||||||||||||||||||| |||||    
T  49720192 aaaactatcgaagtaataataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 49720129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 369 - 442
Target Start/End: Complemental strand, 6206237 - 6206164
Alignment:
Q  369 atttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctact 442  Q
    |||| ||||||| || |||| ||||||||||||||  || ||||||| |||||| |||||||||||||||||||    
T  6206237 atttagcaagtgtactaaaattatcgaagtagtaataaagttcgtatccacgagaaccgttgttaatttctact 6206164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 641 - 688
Target Start/End: Original strand, 22453415 - 22453462
Alignment:
Q  641 agtttaacgatagattaacaaagtaattatacccaatctctttaccta 688  Q
    |||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  22453415 agtttaacgacagattaacaaagtaattctacccaatctcttgaccta 22453462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 688
Target Start/End: Original strand, 23990362 - 23990415
Alignment:
Q  635 ttatctagtttaacgatagattaacaaagtaattatacccaatctctttaccta 688  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||| ||| |||||    
T  23990362 ttatctagttcaacgacagattaacaaagtaattctacccaatcacttgaccta 23990415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 50196723 - 50196803
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||||||| ||||||| |||| |||||| |||  ||||| |||| ||||||||||||||||||| || ||| |||||    
T  50196723 atttggcaagtgtaccaaaaactattgaagtaataataaaatttgtatccacgaggaccgttgttaatctcaacttagcaa 50196803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 48505811 - 48505851
Alignment:
Q  253 aacacaacaacaaaaagggaaaatcaatcggggtttcaatt 293  Q
    ||||||| ||||||||||||||||||||  |||||||||||    
T  48505811 aacacaaaaacaaaaagggaaaatcaattagggtttcaatt 48505851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 208; Significance: 1e-113; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 369 - 688
Target Start/End: Complemental strand, 14790856 - 14790537
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||| ||||||| |||||||||||||||  || ||||||| ||||||||||||||||||||||||||| ||||        |||||||||||    
T  14790856 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttcttt-atcaaaaagga 14790758  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagt 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  14790757 tgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttcagaatattagagagaagt 14790658  T
Q  568 atgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaat 667  Q
    ||| |||||||||| |||||||  |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  14790657 atggttaagaccttcgaatcctctgaagttctcctatggtaatttgcactcctaattcaagcaatgattatctagtttaacgacagattaacaaagtaat 14790558  T
Q  668 tatacccaatctctttaccta 688  Q
    | ||||||||||||| |||||    
T  14790557 tctacccaatctcttgaccta 14790537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 369 - 688
Target Start/End: Complemental strand, 14795884 - 14795565
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||| ||||||| |||||||||||||||  || ||||||   |||||||||||||||||||||||||| ||||        |||||||||||    
T  14795884 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtacctacgaggaccgttgttaatttctactcggcaatttcttt-atcaaaaagga 14795786  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagt 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  14795785 tgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttcagaatattagagagaagt 14795686  T
Q  568 atgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaat 667  Q
    ||| |||||||||| |||||||  |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  14795685 atggttaagaccttcgaatcctctgaagttctcctatggtaatttgcactcctaattcaagcaatgattatctagtttaacgacagattaacaaagtaat 14795586  T
Q  668 tatacccaatctctttaccta 688  Q
    | ||||||||||||| |||||    
T  14795585 tctacccaatctcttgaccta 14795565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 357 - 688
Target Start/End: Complemental strand, 1838724 - 1838393
Alignment:
Q  357 ctaatgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnn 456  Q
    |||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||||            
T  1838724 ctaatgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccacaaggaccgttgttaatttctactcggcaatttcttt- 1838626  T
Q  457 atcaaaaaggatgtataaatttatattgattgc-cctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttaagaa 553  Q
    |||||||||||||||||||||||||||||||   ||||| ||||||  |||  |||| |||  ||||||||| ||||| |||||||||||||||||||||    
T  1838625 atcaaaaaggatgtataaatttatattgatttttcctagacagttggattggtttttataaagtaaacgtaa-taaaagaataaaagttggttttaagaa 1838527  T
Q  554 tattaaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatag 653  Q
    ||||| ||| ||||||| |||||||||| ||||||| ||||||||| |||| |||||| ||||||||| ||||||||| | |||| ||||| ||||| ||    
T  1838526 tattagagagaagtatggttaagaccttcgaatcctccgaagttctcctat-gtaattcgcactcctagttcaatcaacgattatttagttcaacgacag 1838428  T
Q  654 attaacaaagtaattatacccaatctctttaccta 688  Q
    ||||||||||||| | ||||||||||||| |||||    
T  1838427 attaacaaagtaactctacccaatctcttgaccta 1838393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 505 - 682
Target Start/End: Original strand, 32704398 - 32704575
Alignment:
Q  505 tgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagtatgattaagacctttgaatcctacgaagttcttctat 604  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| |||||||||| |||||||  |||||||| ||||    
T  32704398 tgttttgtaacataaacgtaaataaaacaataaaagttggttttcagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctat 32704497  T
Q  605 ggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacccaatctctt 682  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  32704498 ggtaatttgcactcctaattcaagcaatgattatctagtttaacgacagattaacagagtaattctacccaatctctt 32704575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 368 - 688
Target Start/End: Original strand, 19664673 - 19664991
Alignment:
Q  368 gatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||| |||        |||||||||||    
T  19664673 gatttggcaagtgaaccaaaactatcgaagtaataaataaatttgtatccacgaggaccgttgtttatttctactcaacaatttcttt-atcaaaaagga 19664771  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttgtt--ttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataa 565  Q
    ||||| || ||  |  | ||||||||||||||||  ||| |  |||||| ||||||| |   ||||||||||||||| | |||||||| |||| ||| |     
T  19664772 tgtattaaattcaa--ggttgccctaggcagttggattggtatttgtaaaataaacggattaaaaacaataaaagtttggtttaagaaaattagagagat 19664869  T
Q  566 gtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagta 665  Q
    ||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||| || |||| ||||||||||||||    
T  19664870 gtatggttaagaccttcgaatcctccgaagttctcctatggtaatttgcactcctaattcaatcaatgattatctag-ttcacgacagattaacaaagta 19664968  T
Q  666 attatacccaatctctttaccta 688  Q
    | | |||||||| |||| |||||    
T  19664969 actctacccaatatcttgaccta 19664991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 486 - 688
Target Start/End: Original strand, 20527285 - 20527490
Alignment:
Q  486 ttgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaa-caataaaagttggttttaagaatattaaagataagtatgattaagaccttt 582  Q
    ||||||||||||||||| |||  ||||||||| ||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||     
T  20527285 ttgccctaggcagttgaattgatttttgtaacgtaaacataaataaaaacaataaaagttggttttaagaatattagagagaagtatggttaagaccttc 20527384  T
Q  583 gaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacccaatctctt 682  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||  || |||| ||||||||||| ||| | |||||||||||||    
T  20527385 gaatcctccgaagttctcctatggtaatttgcactcctaattcaatcaatgattatctaacttcacgacagattaacaaattaactttacccaatctctt 20527484  T
Q  683 taccta 688  Q
     |||||    
T  20527485 gaccta 20527490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 368 - 688
Target Start/End: Complemental strand, 15535293 - 15534975
Alignment:
Q  368 gatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    ||||| ||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| |        || ||||||||    
T  15535293 gatttcgcatgtgaaccaaaattatcgaagtaataaataaattcgtatccacgaggaccgttgttaacttctactcagccatttcttt-ataaaaaagga 15535195  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataag 566  Q
    ||||| || ||  |  | ||||||||||||||||||||| |||||||| | |||   |   ||||||||||||||| | ||| | || |||||||  | |    
T  15535194 tgtattaaattcaa--ggttgccctaggcagttgagttgattttgtaaaacaaatagattaaaaacaataaaagtttggttttacaaaattaaagtgatg 15535097  T
Q  567 tatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaa 666  Q
    |||| ||||||||||  |||||| ||||||| | ||||||||||||||| ||||||||||||||||| |||||||||| ||||| |||||||||||||||    
T  15535096 tatggttaagaccttcaaatcctccgaagttttcctatggtaatttgcattcctaattcaatcaatgattatctagttcaacgacagattaacaaagtaa 15534997  T
Q  667 ttatacccaatctctttaccta 688  Q
     | || |||||||||| |||||    
T  15534996 ctctaaccaatctcttgaccta 15534975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 360 - 632
Target Start/End: Complemental strand, 27649347 - 27649077
Alignment:
Q  360 atgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatc 459  Q
    ||||||| |||||||||||||||| ||||||||||||||| |||||||  ||| || |||||||||||||||||||| |||||||||||         ||    
T  27649347 atgatagagatttggcaagtgaactaaaactatcgaagtaataaataagatcgaatccacgaggaccgttgttaattcctactcagcaatttctttc-tc 27649249  T
Q  460 aaaaaggatgtat-aaatttatattgattgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatat 556  Q
     ||| ||||| || ||||||   ||| | ||||||||||||||  |||  |||| ||||||||||||| || ||||||||||||||||||||||||| ||    
T  27649248 gaaa-ggatgcattaaattt---ttggtcgccctaggcagttggattggtttttataacataaacgtagatgaaacaataaaagttggttttaagaaaat 27649153  T
Q  557 taaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaat 632  Q
    || ||  ||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||| ||||||||| ||||    
T  27649152 tagagcgaagtatggttaagaccttcgaatcctccgaagttctcctatggtaatttgcacttctaattcaagcaat 27649077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 489 - 688
Target Start/End: Complemental strand, 16883795 - 16883594
Alignment:
Q  489 ccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaag-ttggttttaagaatattaaagataagtatgattaagacctttgaa 585  Q
    |||||||||||||| |||  |||||||||||||||| |   ||||||||||||| ||||||||| ||| |||| ||| ||||||| ||||||| || |||    
T  16883795 ccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattggtttta-gaaaattagagagaagtatggttaagacattcgaa 16883697  T
Q  586 tcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacccaatctctttac 685  Q
    |||| ||||||||| ||||||||||||||||| ||||||||| ||||| |||||||  || |||| ||||||||| | |||   ||||||||||||| ||    
T  16883696 tccttcgaagttctcctatggtaatttgcactactaattcaaacaatgattatctatgttcacgaaagattaacacaataaccctacccaatctcttgac 16883597  T
Q  686 cta 688  Q
    |||    
T  16883596 cta 16883594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 369 - 627
Target Start/End: Complemental strand, 32427536 - 32427281
Alignment:
Q  369 atttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaaggat 468  Q
    |||||| |||||||||||||||||||||||| |||||||||| ||||  ||||||||||||||||||| |||||||||||        |||||||| |||    
T  32427536 atttggtaagtgaaccaaaactatcgaagtaataaataaatttgtatctacgaggaccgttgttaatt-ctactcagcaatttcttt-atcaaaaaagat 32427439  T
Q  469 gtataaatttatattgattgccctaggcagttgagttgtt--ttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataag 566  Q
    |||| || ||  |  | ||||||||| ||||||  ||| |  |||||| ||||||| |   |||||||| |||||| | ||| |||| |||| ||| | |    
T  32427438 gtattaaattcaa--ggttgccctag-cagttggattggtatttgtaaaataaacgaattaaaaacaatgaaagtttggttttagaaaattagagagatg 32427342  T
Q  567 tatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaa 627  Q
    | |||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||    
T  32427341 tttgattaagacctttgaatcctctgaagttctcctatggtaatttgcactcctaattcaa 32427281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 460 - 688
Target Start/End: Original strand, 13017287 - 13017517
Alignment:
Q  460 aaaaaggatgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaacaataaa-agttggtttta-agaatat 556  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||  |   ||||||||||| | ||||||||  |||| ||    
T  13017287 aaaaaggatgtataaatttatattggt-gccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttcagaaaat 13017385  T
Q  557 taaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcct-aattcaatcaatgtttatctagtttaacgatagat 655  Q
    | | || ||||||| ||||| |||| ||||||| | ||| ||| |||||||||||||||||||| |||   ||||||| |||| |||||| ||||  |||    
T  13017386 tga-gagaagtatggttaagtccttcgaatcctccaaagctctcctatggtaatttgcactcctaaatatgatcaatgattatttagtttcacgacggat 13017484  T
Q  656 taacaaagtaattatacccaatctctttaccta 688  Q
    ||||  ||||||| ||||||||||||| |||||    
T  13017485 taacttagtaattctacccaatctcttgaccta 13017517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 574 - 688
Target Start/End: Original strand, 12980705 - 12980818
Alignment:
Q  574 aagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacc 673  Q
    |||||||| ||||||| ||||||||| |||||  |||||| || |||| |||||||||||||  ||||||||||||| ||||||||||||||||| ||||    
T  12980705 aagaccttcgaatcctccgaagttctcctatgaaaatttgtaccccta-ttcaatcaatgttcgtctagtttaacgacagattaacaaagtaattctacc 12980803  T
Q  674 caatctctttaccta 688  Q
    ||||||||| |||||    
T  12980804 caatctcttgaccta 12980818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 472 - 688
Target Start/End: Original strand, 30978321 - 30978539
Alignment:
Q  472 taaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaacaataaa-agttggtttt-aagaatattaaagataagta 568  Q
    ||||||||||||| | ||||||||||||||||||| ||| |||||||||||  |   ||||||||||| | |||||||| ||||| ||| | || |||||    
T  30978321 taaatttatattggt-gccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattga-gagaagta 30978418  T
Q  569 tgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcct-aattcaatcaatgtttatctagtttaacgatagattaacaaagtaat 667  Q
    || ||||| |||| ||||||| | ||| ||| |||||||||||||||||||| ||| | ||||||| |||| |||||| ||||  |||||||  ||||||    
T  30978419 tggttaagtccttcgaatcctccaaagctctcctatggtaatttgcactcctaaatacgatcaatgattatttagtttcacgacggattaacttagtaat 30978518  T
Q  668 tatacccaatctctttaccta 688  Q
    | ||||||||||||| |||||    
T  30978519 tctacccaatctcttgaccta 30978539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 567 - 688
Target Start/End: Original strand, 7769594 - 7769715
Alignment:
Q  567 tatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaa 666  Q
    |||| |||||||||| ||||||| ||| | |||| ||||||||||||||| |  ||||||||||||||| || ||||||||||| | |||||||||||||    
T  7769594 tatggttaagaccttcgaatcctccgatgctcttatatggtaatttgcaccctcaattcaatcaatgttcatttagtttaacgacatattaacaaagtaa 7769693  T
Q  667 ttatacccaatctctttaccta 688  Q
    || ||| |||||| || |||||    
T  7769694 ttctactcaatcttttgaccta 7769715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 574 - 687
Target Start/End: Original strand, 12983592 - 12983704
Alignment:
Q  574 aagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacc 673  Q
    |||||||| ||||||| ||||||||| |||||  ||| || || |||| |||||||||||||  ||||||||||||| ||||||||||||||||| ||||    
T  12983592 aagaccttcgaatcctccgaagttctcctatgaaaatctgtaccccta-ttcaatcaatgttcgtctagtttaacgacagattaacaaagtaattctacc 12983690  T
Q  674 caatctctttacct 687  Q
    ||||||||| ||||    
T  12983691 caatctcttgacct 12983704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 368 - 599
Target Start/End: Complemental strand, 15540807 - 15540578
Alignment:
Q  368 gatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||  ||   ||||| ||||||| |||||||||||||        |||||||||||    
T  15540807 gatttggcaagtgaaccaaaactatcgaagtaataaataaatttgtaaccaatcggaccattgttaacttctactcagcaa-tttctatatcaaaaagga 15540709  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataag 566  Q
    ||||| || ||  |  | || |||||||||||||||||| |||| ||| ||||| | |   |||||||||||||||   ||| |||| |||||||| |      
T  15540708 tgtattaaattcaa--ggtttccctaggcagttgagttgattttctaaaataaagggattaaaaacaataaaagtttagttttagaaaattaaagagatt 15540611  T
Q  567 tatgattaagacctttgaatcctacgaagttct 599  Q
    |||| |||||||||| ||||||| |||||||||    
T  15540610 tatggttaagaccttcgaatcctccgaagttct 15540578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 369 - 688
Target Start/End: Complemental strand, 22221959 - 22221642
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||| ||||||| ||||||||||||||| ||||||||| | |||||||||  |  |||  ||||||| |||||        || ||||||||    
T  22221959 atttggcaagtgtaccaaaagctatcgaagtagtaa-taaattcgtttccacgaggactatatttagcttctactaagcaatttcatt-attaaaaagga 22221862  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaa-caataaa-agttggttttaagaatattaaagata 564  Q
    ||||||||||  ||||| | ||||||||||||||||||| ||| ||||  ||||| ||| ||||| ||||||| | |||||||| |||| ||| | || |    
T  22221861 tgtataaattattattggt-gccctaggcagttgagttgatttagtaa--taaac-taattaaaaacaataaagaattggtttttagaaaattga-gaga 22221767  T
Q  565 agtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcct-aattcaatcaatgtttatctagtttaacgatagattaacaaag 663  Q
    || ||| ||||| |||| ||||||| ||||| ||| |||||||||||||||||| | ||| ||||||||| |||| |||| | ||||  |||||||  ||    
T  22221766 agcatggttaagtccttcgaatcctccgaagctctcctatggtaatttgcactcttaaatacaatcaatgattatttagtatcacgacggattaacttag 22221667  T
Q  664 taattatacccaatctctttaccta 688  Q
    ||||| ||||||||||||| |||||    
T  22221666 taattctacccaatctcttgaccta 22221642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 369 - 688
Target Start/End: Complemental strand, 22247794 - 22247477
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||| ||||||| ||||||||||||||| ||||||||| | |||||||||  |  |||  ||||||| |||||        || ||||||||    
T  22247794 atttggcaagtgtaccaaaagctatcgaagtagtaa-taaattcgtttccacgaggactatatttagcttctactaagcaatttcatt-attaaaaagga 22247697  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaa-caataaa-agttggttttaagaatattaaagata 564  Q
    ||||||||||  ||||| | ||||||||||||||||||| ||| ||||  ||||| ||| ||||| ||||||| | |||||||| |||| ||| | || |    
T  22247696 tgtataaattattattggt-gccctaggcagttgagttgatttagtaa--taaac-taattaaaaacaataaagaattggtttttagaaaattga-gaga 22247602  T
Q  565 agtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcct-aattcaatcaatgtttatctagtttaacgatagattaacaaag 663  Q
    || ||| ||||| |||| ||||||| ||||| ||| |||||||||||||||||| | ||| ||||||||| |||| |||| | ||||  |||||||  ||    
T  22247601 agcatggttaagtccttcgaatcctccgaagctctcctatggtaatttgcactcttaaatacaatcaatgattatttagtatcacgacggattaacttag 22247502  T
Q  664 taattatacccaatctctttaccta 688  Q
    ||||| ||||||||||||| |||||    
T  22247501 taattctacccaatctcttgaccta 22247477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 489 - 558
Target Start/End: Original strand, 11183962 - 11184033
Alignment:
Q  489 ccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatatta 558  Q
    ||||||||||||||||||  |||||||||||||||||||  ||||||||||||||||||||| |||| ||||    
T  11183962 ccctaggcagttgagttgatttttgtaacataaacgtaataaaaacaataaaagttggtttttagaaaatta 11184033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 616 - 666
Target Start/End: Complemental strand, 15540579 - 15540529
Alignment:
Q  616 ctcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaa 666  Q
    ||||||||| |||||||| |||||||||| ||||| |||||||||||||||    
T  15540579 ctcctaatttaatcaatgattatctagttcaacgacagattaacaaagtaa 15540529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 369 - 442
Target Start/End: Original strand, 33678949 - 33679025
Alignment:
Q  369 atttggcaagtgaaccaaaa---ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctact 442  Q
    |||||||||||| |||||||   ||||||||||||||   || ||| ||| ||||||||||||||||||||||||||    
T  33678949 atttggcaagtgtaccaaaaaaactatcgaagtagtactaaagttcatatccacgaggaccgttgttaatttctact 33679025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 361
Target Start/End: Complemental strand, 32090777 - 32090663
Alignment:
Q  254 acacaacaacaaaaagggaaaatcaatcggggtttcaattctcattctattgcatgccaattt-------ctaattgctaattccaatttccttttatta 346  Q
    ||||| ||||||||||||||||||| |  ||||||||||| |  |||||||||||| ||||||       |||||||| ||||| | || ||||||  ||    
T  32090777 acacaccaacaaaaagggaaaatcagttagggtttcaatttttgttctattgcatgtcaatttccttatcctaattgcaaattcaagttcccttttgcta 32090678  T
Q  347 taattagaacctaat 361  Q
    |||||||||||||||    
T  32090677 taattagaacctaat 32090663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 448
Target Start/End: Complemental strand, 11411102 - 11411039
Alignment:
Q  385 aaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    ||||||||||||||| |||  || ||||||| |||||| ||| ||||||||||||||| |||||    
T  11411102 aaaactatcgaagtaataataaagttcgtatccacgagtaccattgttaatttctacttagcaa 11411039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 374 - 425
Target Start/End: Complemental strand, 34502688 - 34502636
Alignment:
Q  374 gcaagtgaaccaaaactatcgaagtagt-aaataaattcgtattcacgaggac 425  Q
    ||||||| || ||||||||||||||||| |||||| ||||||| |||||||||    
T  34502688 gcaagtgtactaaaactatcgaagtagtaaaataagttcgtatccacgaggac 34502636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 369 - 688
Target Start/End: Original strand, 647211 - 647530
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||| ||||||| |||||||||||||||  || || |||| ||||||||||||||||||||||||||| ||||        |||||||||||    
T  647211 atttggcaagtgtaccaaaagctatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctactcggcaatttcttt-atcaaaaagga 647309  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagt 567  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  647310 tgtataaatttatattgattgccctaggcatttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttcagaatattagagagaagt 647409  T
Q  568 atgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaat 667  Q
    ||| |||||| ||| |||||||  |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  647410 atggttaagatcttcgaatcctctgaagttctcctatggtaatttgcactcctaattcaagcaatgattatctagtttaacgacagattaacaaagtaat 647509  T
Q  668 tatacccaatctctttaccta 688  Q
    | ||||||||||||| |||||    
T  647510 tctacccaatctcttgaccta 647530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 369 - 688
Target Start/End: Original strand, 650483 - 650802
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||| ||||||| |||||||||||||||  || || |||| ||||||||||||||||||||||||||| ||||        |||||||||||    
T  650483 atttggcaagtgtaccaaaagctatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctactcggcaatttctat-atcaaaaagga 650581  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagt 567  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||    
T  650582 tgtataaatttatattgattgccctaggcatttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttcataatattagagagaagt 650681  T
Q  568 atgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaat 667  Q
    ||| |||||||||| |||||||  |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  650682 atggttaagaccttcgaatcctctgaagttctcctatggtaatttgcactcctaattcaagcaatgattatctagtttaacgacagattaacaaagtaat 650781  T
Q  668 tatacccaatctctttaccta 688  Q
    | ||||||||||||| |||||    
T  650782 tctacccaatctcttgaccta 650802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 368 - 688
Target Start/End: Original strand, 26062697 - 26063020
Alignment:
Q  368 gatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggacc--gttgttaatttctactcagcaannnnnnnnatcaaaaag 465  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||  |||||||| ||||||||| |||        |||||||||    
T  26062697 gatttggcaagtgaaccaaaactatcgaaataataaataaattcgtatccacgaggaccccgttgttaacttctactcaacaatttcttt-atcaaaaag 26062795  T
Q  466 gatgtataaatttatattgattgccctaggcagttgagttgtt--ttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagat 563  Q
    ||||||| || ||  |  | |||||||||| |||||  ||| |  |||||| ||||||| |   ||||||||||||||| | ||| |||| |||| |||     
T  26062796 gatgtattaaattcaa--ggttgccctaggtagttggattggtatttgtaaaataaacggattaaaaacaataaaagtttggttttagaaaattagagag 26062893  T
Q  564 aa--gtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaa 661  Q
    |   ||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||    
T  26062894 agatgtatggttaagacctttgaatcctccgaagttctcctatggtaatttgcactcctaattcaatcaatgattatctagttcaacgacagattaacaa 26062993  T
Q  662 agtaattatacccaatctctttaccta 688  Q
    ||||| | ||||||||||||| |||||    
T  26062994 agtaactctacccaatctcttgaccta 26063020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 572 - 688
Target Start/End: Complemental strand, 26060622 - 26060506
Alignment:
Q  572 ttaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattata 671  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |||||||| ||  ||||||||||||||||||| | ||    
T  26060622 ttaagaccttcgaatcctccgaagttctcctatggtaatttgcactcctaattcaagcaatgattatctagcttcccgatagattaacaaagtaactcta 26060523  T
Q  672 cccaatctctttaccta 688  Q
    ||||||||||| |||||    
T  26060522 cccaatctcttgaccta 26060506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 487 - 688
Target Start/End: Complemental strand, 2542005 - 2541803
Alignment:
Q  487 tgccctaggcagttgagttgttt--tgtaacataaacgtaaataaaacaataaaagtt-ggttttaagaatattaaagataagtatgattaagacctttg 583  Q
    |||||||||||||||||||  ||  ||||||||||||| |   ||||||||||||  | ||||||  ||| ||||||||   ||||| |||||||||| |    
T  2542005 tgccctaggcagttgagtttattcttgtaacataaacggattaaaaacaataaaatataggttttttgaaaattaaagag--gtatggttaagaccttcg 2541908  T
Q  584 aatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacccaatctcttt 683  Q
    ||||||  ||||||||  |||||||||||| ||||||| ||||| ||||| |||||||||| ||||| ||||||||||||||||| || ||||||||||     
T  2541907 aatcctctgaagttctcttatggtaatttgtactcctatttcaagcaatgattatctagttaaacgacagattaacaaagtaattttatccaatctcttg 2541808  T
Q  684 accta 688  Q
    |||||    
T  2541807 accta 2541803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 359 - 448
Target Start/End: Complemental strand, 15851539 - 15851450
Alignment:
Q  359 aatgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||  ||||||||||||| |||||||||||||||||| ||   || ||||||| |||||||||||||||||||||||||| |||||    
T  15851539 aatgataaagatttggcaagtgtaccaaaactatcgaagtaatagtaaagttcgtatccacgaggaccgttgttaatttctacttagcaa 15851450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 460 - 688
Target Start/End: Complemental strand, 12172119 - 12171901
Alignment:
Q  460 aaaaaggatgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaacaataaa-agttggttttaagaatatt 557  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||  |   ||||||||||| | |||||||  ||||        
T  12172119 aaaaaggatgtataaatttatattggt-gccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagatttggtttctagaa---- 12172025  T
Q  558 aaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaatt-caatcaatgtttatctagtttaacgatagatt 656  Q
            ||||| ||||| |||| ||||| | ||||| ||  |||||||||||||||||||||| | ||||||||| |||| |||||| ||||  ||||    
T  12172024 --------gtatggttaagtccttggaatcttccgaagctcgcctatggtaatttgcactcctaaatacaatcaatgattatttagtttcacgacggatt 12171933  T
Q  657 aacaaagtaattatacccaatctctttaccta 688  Q
    |||  ||||||| ||||||||||||| |||||    
T  12171932 aacttagtaattctacccaatctcttgaccta 12171901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 376 - 444
Target Start/End: Original strand, 21217350 - 21217418
Alignment:
Q  376 aagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactca 444  Q
    ||||| || ||||||||| ||||| |||  |||||||||||||||||||||||| ||||||||||||||    
T  21217350 aagtgtactaaaactatcaaagtaataataaaattcgtattcacgaggaccgttattaatttctactca 21217418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 487 - 549
Target Start/End: Original strand, 11649329 - 11649393
Alignment:
Q  487 tgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggtttta 549  Q
    ||||||||||||||||||||  |||||||| ||||||| ||  ||||||||||||||||||||||    
T  11649329 tgccctaggcagttgagttgacttttgtaatataaacgaaataaaaacaataaaagttggtttta 11649393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 369 - 448
Target Start/End: Complemental strand, 19929234 - 19929155
Alignment:
Q  369 atttggcaagtgaaccaa-aactatcgaagtagtaaataaat-tcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||||||| ||||| ||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||| |||||    
T  19929234 atttggcaagtgtaccaataactatcgaagtagtaa-taaatatcgt-tccacgaggaccgttgttaatttctacttagcaa 19929155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 52629036 - 52628956
Alignment:
Q  236 aaattcacacatgtaagaacacaacaacaaaaagggaaaatcaatcggggtttcaattctcattctattgcatgccaatttc 317  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||   || ||||||| ||||||| |||||||| |||||||    
T  52629036 aaatccacacatgtaacaacacaataacaaaaagggaaaatcaactaggttttcaatcctcattc-attgcatgtcaatttc 52628956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 572 - 624
Target Start/End: Original strand, 11649444 - 11649496
Alignment:
Q  572 ttaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaatt 624  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||||| |||||    
T  11649444 ttaagaccttcgaatcctccgaagttctcctatggtaatttgcactcataatt 11649496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 31979341 - 31979285
Alignment:
Q  253 aacacaacaacaaaaagggaaaatcaatcggggtttcaattctcattctattgcatg 309  Q
    ||||||||||||||||||  ||||||||  ||||||||||| |||||||||||||||    
T  31979341 aacacaacaacaaaaaggttaaatcaattagggtttcaattatcattctattgcatg 31979285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 33400083 - 33400163
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||||||| ||||||| ||||||| |||||||  || ||||||| |||||| |||||||||||||||| || |||||    
T  33400083 atttggcaagtgtaccaaaagctatcgaggtagtaataaagttcgtatccacgagaaccgttgttaatttctgcttagcaa 33400163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 31980692 - 31980626
Alignment:
Q  160 tttcattaaaatctaattttctcacactaatcacaatactcgttaatctcacttaaagattttaagc 226  Q
    ||||||||||| |||||||||||| |||||||||||||| | || ||||||| |||| |||| ||||    
T  31980692 tttcattaaaacctaattttctcatactaatcacaatacacattgatctcacataaatatttcaagc 31980626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 549
Target Start/End: Complemental strand, 26060732 - 26060668
Alignment:
Q  487 tgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggtttta 549  Q
    |||||||||||| |||||||  |||||||| ||||| | ||  ||||||||||||||||||||||    
T  26060732 tgccctaggcaggtgagttgatttttgtaatataaatgaaataaaaacaataaaagttggtttta 26060668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 4e-77; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 361 - 688
Target Start/End: Original strand, 23673345 - 23673671
Alignment:
Q  361 tgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatca 460  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||        ||||    
T  23673345 tgatagagatttggcaagtgaaccaaaactatcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcaacaatttcttt-atca 23673443  T
Q  461 aaaaggatgtataaatttatattgattgccctaggcagttgagttgt--tttgtaacataaacgtaaataaaacaataaaagttggttttaagaatatta 558  Q
    |||||||||||| || ||  |  | ||||||||||||||||  |||   ||||||| ||||||| |   ||||||||||||||| | ||| |||| ||||    
T  23673444 aaaaggatgtattaaattcaa--ggttgccctaggcagttggattggcatttgtaaaataaacggattaaaaacaataaaagtttggttttagaaaatta 23673541  T
Q  559 aagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaa 658  Q
     ||| | ||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||    
T  23673542 gagagatgtatggttaagaccttcgaatcctccgaagttctcctatggtaatttgcactcctaattcaatcaatgattatctagtttaacgacaaattaa 23673641  T
Q  659 caaagtaattatacccaatctctttaccta 688  Q
    |||||||||| ||||||||||||| |||||    
T  23673642 caaagtaattctacccaatctcttgaccta 23673671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 360 - 688
Target Start/End: Complemental strand, 36327172 - 36326845
Alignment:
Q  360 atgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatc 459  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||| ||||        |||    
T  36327172 atgatagatatttggcaagtgaaccaaaactatcgaagtaataaataaattcgtatccacgaggaccgttgttaacttctactctgcaatttcttt-atc 36327074  T
Q  460 aaaaaggatgtat-aaatttatattgattgccctaggcagtt-gagttgt-tttgtaacataaacgtaaataaaacaataaaagttggttttaagaatat 556  Q
    ||||| ||||||| ||||| | | |   ||||||||| |||| || | || ||||||| ||||||| |   ||||||||||||||| | ||| |||| ||    
T  36327073 aaaaaagatgtattaaattcaaagt---tgccctaggaagttagattggtatttgtaaaataaacggattaaaaacaataaaagtttggttttagaaaat 36326977  T
Q  557 taaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagatt 656  Q
    || ||| | ||||| |||||||||||||||||| |||||||||  |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  36326976 tagagagatgtatggttaagacctttgaatcctccgaagttctcatatggtaatttgcactcctaattcaagcaatgattatctaatttaacgatagatt 36326877  T
Q  657 aacaaagtaattatacccaatctctttaccta 688  Q
    |||||||||||| ||||||||||||| |||||    
T  36326876 aacaaagtaattctacccaatctcttgaccta 36326845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 359 - 688
Target Start/End: Complemental strand, 16295145 - 16294817
Alignment:
Q  359 aatgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnat 458  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||  ||  || ||||||||||||||||||||||||||||||||        ||    
T  16295145 aatgatagagatttggcaagtgaaccaaaactatcgaagtaataaataagatcaaatccacgaggaccgttgttaatttctactcagcaatttcgtt-at 16295047  T
Q  459 caaaaaggatgtataaa-tttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaataaaacaataaaag-ttggttttaagaata 555  Q
    | ||| ||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |||||||  |   |||||||  |||| || ||||| |||| |    
T  16295046 cgaaa-ggatgtataaaatttatattgat-gccctaggcagttgagttgattttgtatcataaaccgattaaaaacaaataaagattagttttcagaaaa 16294949  T
Q  556 ttaaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagat 655  Q
    || | || ||||||| ||||| |||| ||||||| ||||||||| ||||||||||||||||||||| || |||||||| |||| |||||| |||| ||||    
T  16294948 ttga-gagaagtatggttaagtccttcgaatcctccgaagttctcctatggtaatttgcactcctagtttaatcaatgattatttagtttcacgacagat 16294850  T
Q  656 taacaaagtaattatacccaatctctttaccta 688  Q
    ||||  ||||||| ||||||||||||| |||||    
T  16294849 taacttagtaattctacccaatctcttgaccta 16294817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 369 - 688
Target Start/End: Original strand, 32575693 - 32576013
Alignment:
Q  369 atttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaaggat 468  Q
    |||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||||||||| ||||||||| | |        || | ||| |||    
T  32575693 atttggcaagtgaaccaacactattgaagtaataaataaattcgtatccacgaggaccgttgttaacttctactcaacgatttcgtt-ataataaatgat 32575791  T
Q  469 gtataaatttatattgattgccctaggcagttgagttgttttg-taacataaacgtaaataaaacaataaaagttggttttaagaatattaaagata--a 565  Q
    |||| || ||  |||| || |||||||||||||  |||||||  |||  |||||||||||||||||||||||||||||||||||||||||| ||| |  |    
T  32575792 gtattaaattcaattg-ttaccctaggcagttggattgtttttataaagtaaacgtaaataaaacaataaaagttggttttaagaatattagagaaagaa 32575890  T
Q  566 gtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagta 665  Q
    ||||| |||||||||| ||||||| ||||| ||| ||||| ||||||||||||||| |||||  |||| |||| |||||| |||| ||||||||  ||||    
T  32575891 gtatggttaagaccttcgaatcctccgaagctctcctatgataatttgcactcctagttcaaaaaatgattatttagtttcacgacagattaacttagta 32575990  T
Q  666 attatacccaatctctttaccta 688  Q
    | | |||| |||| ||| |||||    
T  32575991 actctaccaaatcccttgaccta 32576013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 460 - 638
Target Start/End: Complemental strand, 40018126 - 40017948
Alignment:
Q  460 aaaaaggatgtataaa-tttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatatta 558  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| |   |||||||||| ||   | |||||||| | |     
T  40018126 aaaaaggatgtataaaatttatattgat-gccctaggcagttgagttgatttgtaacataaacggattaaaaacaataagagactggtttaagaaaaatt 40018028  T
Q  559 aagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttat 638  Q
     ||| ||||||| |||||||||| ||||||| ||||  ||| ||||||||||||||||||||||||||| ||||| ||||    
T  40018027 gagagaagtatggttaagaccttcgaatcctccgaaactctcctatggtaatttgcactcctaattcaaccaatgattat 40017948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 460 - 688
Target Start/End: Complemental strand, 31626698 - 31626468
Alignment:
Q  460 aaaaaggatgtataaa-tttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaataaaac-aataaaag-ttggttttaagaata 555  Q
    ||||||||||| |||| ||||||||| | ||||||||||||||||||| |||||||||||||| | || |||||  |||||| | ||||||||| ||| |    
T  31626698 aaaaaggatgtgtaaaatttatattggt-gccctaggcagttgagttgattttgtaacataaaaggaattaaaaataataaaggattggtttta-gaaaa 31626601  T
Q  556 ttaaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagat 655  Q
    |   ||| ||| ||| ||||| | || ||||||| ||||| ||| ||||||||||||||||||||||||||||||||  |||| |||||| |||| ||||    
T  31626600 tctgagagaagaatggttaagtcattcgaatcctccgaagctctcctatggtaatttgcactcctaattcaatcaattattatttagtttcacgacagat 31626501  T
Q  656 taacaaagtaattatacccaatctctttaccta 688  Q
    ||||  ||||||| ||||||||||||| |||||    
T  31626500 taacttagtaattctacccaatctcttgaccta 31626468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 460 - 688
Target Start/End: Complemental strand, 31528537 - 31528307
Alignment:
Q  460 aaaaaggatgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaacaataaa-agttggtttt-aagaatat 556  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||  |   ||||||||||| | |||||||| ||||| ||    
T  31528537 aaaaaggatgtataaatttatattggt-gccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaat 31528439  T
Q  557 taaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaatt-caatcaatgtttatctagtttaacgatagat 655  Q
    | | || ||||||| ||||| |||| |||||||   ||| ||| || ||||||||||||||||||| | | ||||||| |||| |||||| |||| ||||    
T  31528438 tga-gagaagtatggttaagtccttcgaatcctctaaagctctcctgtggtaatttgcactcctaaatacgatcaatgattatttagtttcacgacagat 31528340  T
Q  656 taacaaagtaattatacccaatctctttaccta 688  Q
    ||||  ||||||| ||||||||||||| |||||    
T  31528339 taacttagtaattctacccaatctcttgaccta 31528307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 460 - 682
Target Start/End: Complemental strand, 13710218 - 13709995
Alignment:
Q  460 aaaaaggatgtataaa-tttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaag-ttggttttaagaatatt 557  Q
    |||||||||||||||| ||||||||||| |||  ||| ||||||||||  |||||||||||||| |   ||||||||||||| ||||||||| ||| |||    
T  13710218 aaaaaggatgtataaaatttatattgat-gcctgaggaagttgagttgagttgtaacataaacggattaaaaacaataaaagattggtttta-gaaaatt 13710121  T
Q  558 aaagataagtatgattaagacctttgaatcctacgaa-gttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagatt 656  Q
      ||| ||||||| ||||||||||  |||| |  ||| | ||| ||||| |||||||||||||||||| |  ||||| |||||||||| ||| | |||||    
T  13710120 tgagagaagtatggttaagaccttcaaatcatctgaaagctctcctatgataatttgcactcctaatttaggcaatgattatctagttcaacaacagatt 13710021  T
Q  657 aacaaagtaattatacccaatctctt 682  Q
    |||||||||||| ||||| |||||||    
T  13710020 aacaaagtaattctacccgatctctt 13709995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 24384933 - 24385014
Alignment:
Q  369 atttggcaagtgaaccaaaactatcgaagtagtaaa--taaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||||||| |||||||||||||||||| ||||  ||||||||||||||||| ||| ||| |||||||||||| |||||    
T  24384933 atttggcaagtgtaccaaaactatcgaagtaataaaattaaattcgtattcacgatgactgttattaatttctacttagcaa 24385014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 385 - 448
Target Start/End: Complemental strand, 29436088 - 29436025
Alignment:
Q  385 aaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    ||||||||||||||| |||  || ||||||| |||||||||||||||||||||||||| |||||    
T  29436088 aaaactatcgaagtaataataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 29436025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 369 - 436
Target Start/End: Original strand, 38315809 - 38315876
Alignment:
Q  369 atttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatt 436  Q
    |||||| ||||| | ||||||||||||||||||||  || ||||||| ||||||||||||||||||||    
T  38315809 atttggtaagtgtatcaaaactatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatt 38315876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 40927966 - 40927916
Alignment:
Q  253 aacacaacaacaaaaagggaaaatcaatcggggtttcaattctcattctat 303  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||    
T  40927966 aacacaaaaacaaaaagggaaaatcaattagggtttcaattctcattctat 40927916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 27409395 - 27409451
Alignment:
Q  253 aacacaacaacaaaaagggaaaatcaatcggggtttcaattctcattctattgcatg 309  Q
    ||||||||||||||||||  ||||||||  ||||||||||| |||||||||||||||    
T  27409395 aacacaacaacaaaaaggttaaatcaattagggtttcaattatcattctattgcatg 27409451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 374 - 425
Target Start/End: Original strand, 1503204 - 1503256
Alignment:
Q  374 gcaagtgaaccaaaactatcgaagtagtaaa-taaattcgtattcacgaggac 425  Q
    ||||||| || ||||||||||||||| |||| ||||||||||| |||||||||    
T  1503204 gcaagtgtactaaaactatcgaagtaataaaataaattcgtatccacgaggac 1503256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 374 - 425
Target Start/End: Original strand, 1506408 - 1506460
Alignment:
Q  374 gcaagtgaaccaaaactatcgaagtagtaaa-taaattcgtattcacgaggac 425  Q
    ||||||| || ||||||||||||||| |||| ||||||||||| |||||||||    
T  1506408 gcaagtgtactaaaactatcgaagtaataaaataaattcgtatccacgaggac 1506460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 572 - 688
Target Start/End: Complemental strand, 8427259 - 8427144
Alignment:
Q  572 ttaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattata 671  Q
    ||||||| || ||||| | ||| |||||| | ||||||||||||| |||  |||||||||||| | ||||||||||| | ||||||| ||| |  || ||    
T  8427259 ttaagacattcgaatcatccgatgttcttatttggtaatttgcacccctg-ttcaatcaatgtctttctagtttaacaacagattaataaaatggttcta 8427161  T
Q  672 cccaatctctttaccta 688  Q
    | ||||||||| |||||    
T  8427160 ctcaatctcttgaccta 8427144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 389 - 437
Target Start/End: Original strand, 13572070 - 13572118
Alignment:
Q  389 ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaattt 437  Q
    |||||||||||||||  || |||||||  ||||||||||||||||||||    
T  13572070 ctatcgaagtagtaataaagttcgtatctacgaggaccgttgttaattt 13572118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 2e-54; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 361 - 688
Target Start/End: Complemental strand, 13979730 - 13979405
Alignment:
Q  361 tgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatca 460  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| ||| || ||||||||| | ||||||||||||||||||||        |||     
T  13979730 tgatagagatttggcaagtgaaccaaaactatcgaagtaataaataaaatcgaatccacgaggactgctgttaatttctactcagcaatttcttt-atcg 13979632  T
Q  461 aaaaggatgtataaatttatat-tgattgccctaggcagttgagttgttttg--taacataaacgtaaataaaacaataaaagttggttttaagaatatt 557  Q
    ||| |||||||| ||   |||| || |||||| |||||||||  ||| |||   |||  |||||||||||||||||||||||||||||||||||||||||    
T  13979631 aaa-ggatgtattaa---atatctggttgcccaaggcagttggattggttttaataaagtaaacgtaaataaaacaataaaagttggttttaagaatatt 13979536  T
Q  558 aaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagatta 657  Q
    | ||| ||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||| | ||||| ||||| |||| |||||| | || ||||||    
T  13979535 agagagaagtatggttaagacctttgaatcctccgaagctctcctatggtaatttgcactccaagttcaaacaatgattatttagtttcatgacagatta 13979436  T
Q  658 acaaagtaattatacccaatctctttaccta 688  Q
    ||  ||||| | || |||||| ||| |||||    
T  13979435 acttagtaactctatccaatcccttgaccta 13979405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 572 - 687
Target Start/End: Complemental strand, 46731529 - 46731414
Alignment:
Q  572 ttaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattata 671  Q
    |||||||||| ||||||| |||||||||  |||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||| | ||    
T  46731529 ttaagaccttcgaatcctccgaagttctcatatggtaatttgcactcctaattcaatcaatgattatctagttcaacgacatattaacaaagtaactcta 46731430  T
Q  672 cccaatctctttacct 687  Q
    ||||||||||| ||||    
T  46731429 cccaatctcttgacct 46731414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 460 - 688
Target Start/End: Original strand, 39563607 - 39563837
Alignment:
Q  460 aaaaaggatgtataaa-tttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaataaaacaa-taaaag-ttggttttaagaata 555  Q
    ||||||||||| |||| |||||||| | |||||||||||||||||||| |||||||||||||||  || |||||  | |||||| ||||||||| ||| |    
T  39563607 aaaaaggatgtgtaaaatttatatt-agtgccctaggcagttgagttgattttgtaacataaacaaaattaaaaatagtaaaagattggtttta-gaaaa 39563704  T
Q  556 ttaaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagat 655  Q
    |   ||| ||| ||| ||||| |||| ||||||| ||| | ||| ||||| ||||||||||||||||||||||||||| |||| |||||| |||| ||||    
T  39563705 tctgagagaagaatggttaagtccttcgaatcctccgacgctctcctatgataatttgcactcctaattcaatcaatggttatttagtttcacgacagat 39563804  T
Q  656 taacaaagtaattatacccaatctctttaccta 688  Q
    ||||  ||||||| ||||||||||||| |||||    
T  39563805 taacttagtaattctacccaatctcttgaccta 39563837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 35091823 - 35091912
Alignment:
Q  272 aaaatcaatcggggtttcaattctcattctattgcatgccaatttctaattgctaattccaatttccttttattataattagaacctaat 361  Q
    |||||||||  |||||||| |||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||    
T  35091823 aaaatcaattagggtttcagttctcattctattgcatgtcaatttctaattgctaattccagttcccttttattataattagaacctaat 35091912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 160 - 270
Target Start/End: Original strand, 35091672 - 35091783
Alignment:
Q  160 tttcattaaaatctaattttctcacactaatcacaatactcgttaatctcacttaaagattttaagc-tagttgatcaaattcacacatgtaagaacaca 258  Q
    |||||||||||  ||||||||||| |||||||||||||| | ||||||| || ||||| |||| ||| || |||||||||||||||||||||||||||||    
T  35091672 tttcattaaaacttaattttctcatactaatcacaatacccattaatctaacataaagtttttgagcctaattgatcaaattcacacatgtaagaacaca 35091771  T
Q  259 acaacaaaaagg 270  Q
    ||||||||||||    
T  35091772 acaacaaaaagg 35091783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 460 - 688
Target Start/End: Original strand, 22626410 - 22626638
Alignment:
Q  460 aaaaaggatgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaacaataaa-agttggttttaagaatatt 557  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||  |   ||||||||||| | |||| |||| ||| |||    
T  22626410 aaaaaggatgtataaatttatattggt-gccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggattta-gaaaatt 22626507  T
Q  558 aaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcct-aattcaatcaatgtttatctagtttaacgatagatt 656  Q
     | || ||||||| ||||| |||| ||||||| | ||| ||| |||||||||||||||||||| ||| | ||||||| |||| |||||| ||||  ||||    
T  22626508 ga-gagaagtatggttaagtccttcgaatcctccaaagctctcctatggtaatttgcactcctaaatacgatcaatgattatttagtttcacgacggatt 22626606  T
Q  657 aacaaagtaattatacccaatctctttaccta 688  Q
    |||  ||||||| || |||||||||| |||||    
T  22626607 aacttagtaattctatccaatctcttgaccta 22626638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 361 - 448
Target Start/End: Complemental strand, 46731699 - 46731612
Alignment:
Q  361 tgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||| |||||||||||||||| ||||||||||||||| | |||||||| |||| |||||||||||||||||| |||||||||||||    
T  46731699 tgatagagatttggcaagtgaacaaaaactatcgaagtaatgaataaatttgtatccacgaggaccgttgttaacttctactcagcaa 46731612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 460 - 688
Target Start/End: Original strand, 11138668 - 11138896
Alignment:
Q  460 aaaaaggatgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaacaataaa-agttggttttaagaatatt 557  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||  |   ||||||||| | | |||| || | ||| |||    
T  11138668 aaaaaggatgtataaatttatattggt-gccctaggcagttgagttgatttagtaacataaactgattaaaaacaatatagaattggattca-gaaaatt 11138765  T
Q  558 aaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcct-aattcaatcaatgtttatctagtttaacgatagatt 656  Q
     | || ||||||| ||||| |||| ||||||| | ||| ||| |||||||||||||||||||| ||| | ||||||| |||| |||||| ||||  ||||    
T  11138766 ga-gagaagtatggttaagtccttcgaatcctccaaagctctcctatggtaatttgcactcctaaatacgatcaatgattatttagtttcacgacggatt 11138864  T
Q  657 aacaaagtaattatacccaatctctttaccta 688  Q
    |||  ||||||| || |||||||||| |||||    
T  11138865 aacttagtaattctatccaatctcttgaccta 11138896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 567 - 688
Target Start/End: Complemental strand, 47412222 - 47412101
Alignment:
Q  567 tatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaa 666  Q
    |||||||||||||||||||||||   | ||||||||| |||||||||||| |  ||||||||||||||| ||||| |||||| | |||||||||   |||    
T  47412222 tatgattaagacctttgaatcctctaatgttcttctacggtaatttgcacccacaattcaatcaatgttcatctaatttaacaacagattaacacgataa 47412123  T
Q  667 ttatacccaatctctttaccta 688  Q
    || ||| ||||||||| |||||    
T  47412122 ttctactcaatctcttgaccta 47412101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 369 - 448
Target Start/End: Complemental strand, 27055228 - 27055149
Alignment:
Q  369 atttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    ||||||||||   ||||||||||||||||||||||  || ||||||| |||||||||||||||||||||||||| |||||    
T  27055228 atttggcaagcataccaaaactatcgaagtagtaataaatttcgtatccacgaggaccgttgttaatttctacttagcaa 27055149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 369 - 448
Target Start/End: Complemental strand, 19869335 - 19869255
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||||||| || |||| ||||| |||||||||  || ||||||| |||||||||||||||||||||||||| |||||    
T  19869335 atttggcaagtgtactaaaatctatcaaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 19869255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 26822048 - 26822122
Alignment:
Q  370 tttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactca 444  Q
    ||||| ||||| |||||||||||||||||| |||  |||||||||| ||| ||||||| ||||||||| ||||||    
T  26822048 tttggaaagtgtaccaaaactatcgaagtaataataaaattcgtatccacaaggaccgctgttaatttttactca 26822122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 487 - 558
Target Start/End: Complemental strand, 50096902 - 50096829
Alignment:
Q  487 tgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatatta 558  Q
    ||||||| ||||||||||||  |||||||||||||||||||  |||||| |||||||||||||| |||| ||||    
T  50096902 tgccctaagcagttgagttgatttttgtaacataaacgtaataaaaacagtaaaagttggtttttagaaaatta 50096829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 595 - 688
Target Start/End: Complemental strand, 35366387 - 35366295
Alignment:
Q  595 gttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacccaatctctttaccta 688  Q
    ||||||||| |||||||||||| || ||||||||||||||| || || |||||||| | ||||||||  ||||| ||| ||||||||| |||||    
T  35366387 gttcttctacggtaatttgcacccc-aattcaatcaatgttcatataatttaacgacaaattaacaagataattctactcaatctcttgaccta 35366295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 547
Target Start/End: Original strand, 20536459 - 20536520
Alignment:
Q  487 tgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttt 547  Q
    ||||||||||||||| ||||  || ||||||| |||||||| |||||||||||||||||||||    
T  20536459 tgccctaggcagttgggttgacttgtgtaacacaaacgtaa-taaaacaataaaagttggttt 20536520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 25492249 - 25492175
Alignment:
Q  375 caagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||| ||||||| ||||| || ||||||  || ||||||| |||||||| ||||||||||||||||| |||||    
T  25492249 caagtgtaccaaaagctatcaaaatagtaataaagttcgtatccacgaggatcgttgttaatttctacttagcaa 25492175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 374 - 425
Target Start/End: Complemental strand, 18883561 - 18883509
Alignment:
Q  374 gcaagtgaaccaaaactatcgaagtagtaaa-taaattcgtattcacgaggac 425  Q
    ||||||| || ||||||||| |||||||||| ||| |||||||||||||||||    
T  18883561 gcaagtgtactaaaactatcaaagtagtaaaataagttcgtattcacgaggac 18883509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 4e-46; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 369 - 682
Target Start/End: Original strand, 12575308 - 12575620
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||| ||||||  | ||||||||| ||||||| ||||||| ||||||||| |||||||| ||||||||| |||        || ||||||||    
T  12575308 atttggcaagtgtaccaaattcaatcgaagtaataaataa-ttcgtatccacgaggactgttgttaacttctactcaacaagttcatt-attaaaaagga 12575405  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaag-ttggttttaagaatattaaagata 564  Q
    ||||| || ||  || |  ||||||||||||||||||||  ||||||||||||||   |   ||||||||||||| |||||||| |||| |||| ||| |    
T  12575406 tgtattaaattcaatgg--tgccctaggcagttgagttgatttttgtaacataaattgattaaaaacaataaaagattggtttt-agaaaattagagaga 12575502  T
Q  565 agtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagt 664  Q
    |||||| |||||||| ||||||||| ||||||| |  |||||||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||||    
T  12575503 agtatggttaagaccattgaatcctccgaagttttcttatggtaatttgcactcctaattcaagcaatgataatctagtttaacgacagattaacaaagt 12575602  T
Q  665 aattatacccaatctctt 682  Q
    |||| |||| ||||||||    
T  12575603 aattctacctaatctctt 12575620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 370 - 627
Target Start/End: Complemental strand, 14418698 - 14418445
Alignment:
Q  370 tttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaaggatg 469  Q
    |||||||||||||||||| ||||||||||||||||||| ||||| | |||||||||||||||||| | | ||| |||||        ||||||||||||     
T  14418698 tttggcaagtgaaccaaagctatcgaagtagtaaataa-ttcgt-tccacgaggaccgttgttaactacaacttagcaatttcttt-atcaaaaaggata 14418602  T
Q  470 tataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagtat 569  Q
    | | || ||  || | ||||||||||||||||||||| ||| ||||||||||  |   ||||||||||||||||||||||||||||||| ||| ||||||    
T  14418601 tgttaaattcaatgg-ttgccctaggcagttgagttggtttttaacataaacaaattaaaaacaataaaagttggttttaagaatattagagagaagtat 14418503  T
Q  570 gattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaa 627  Q
    | ||||||| || ||||||| |||| |||| ||||| |||||||||||||||||||||    
T  14418502 ggttaagacattcgaatcctccgaatttctcctatgataatttgcactcctaattcaa 14418445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 487 - 688
Target Start/End: Original strand, 41778866 - 41779068
Alignment:
Q  487 tgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagtatgattaagacctttga 584  Q
    |||||||||||||||| |||  |||||||||||||||| |   ||||||||||||| | | |||| ||| |||||||| ||||||| ||||||||||  |    
T  41778866 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattgattta-gaagattaaagagaagtatggttaagaccttcaa 41778964  T
Q  585 atcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacccaatctcttta 684  Q
    ||| | ||||||||| ||||| |||||||||||  |||||||| ||||| |||||||| || |||| ||||||||| | ||| | ||||||||||||| |    
T  41778965 atcttccgaagttctcctatgctaatttgcactagtaattcaaacaatgattatctaggttcacgacagattaacacaataactctacccaatctcttga 41779064  T
Q  685 ccta 688  Q
    ||||    
T  41779065 ccta 41779068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 528 - 682
Target Start/End: Complemental strand, 13097099 - 13096946
Alignment:
Q  528 aaaacaataaaag-ttggttttaagaatattaaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattca 626  Q
    ||||||||||||| || |||||| ||| |||| ||| ||||||| |||||||||| ||||||| ||||||| | ||||| |||||||||||||||||| |    
T  13097099 aaaacaataaaagattagtttta-gaaaattagagagaagtatggttaagaccttcgaatcctccgaagttatcctatg-taatttgcactcctaattta 13097002  T
Q  627 atcaatgtttatctagtttaacgatagattaacaaagtaattatacccaatctctt 682  Q
    | ||||| |||||||||| || || ||||||||||||||||| |||||||||||||    
T  13097001 agcaatgattatctagttcaatgaaagattaacaaagtaattctacccaatctctt 13096946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 39659720 - 39659799
Alignment:
Q  369 atttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||||||| ||| ||||||||||||||||||  || ||||||| |||||||||| ||||||||||||||| |||||    
T  39659720 atttggcaagtgtaccgaaactatcgaagtagtaataaagttcgtatccacgaggaccattgttaatttctacttagcaa 39659799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 369 - 448
Target Start/End: Complemental strand, 9467421 - 9467341
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||||||| ||||||| |||||||||||||||  || ||||||| ||||||||||||||||||||||| || |||||    
T  9467421 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttcttcttagcaa 9467341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 487 - 549
Target Start/End: Original strand, 41836318 - 41836382
Alignment:
Q  487 tgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggtttta 549  Q
    ||||||||||||||||||||  |||||||| ||||||| ||  ||||||||||||||||||||||    
T  41836318 tgccctaggcagttgagttgacttttgtaatataaacgaaataaaaacaataaaagttggtttta 41836382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 369 - 448
Target Start/End: Complemental strand, 453943 - 453863
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    ||||| |||||| ||||||| |||| |||||| |||  || ||||||| |||||||||||||||||||||||||| |||||    
T  453943 atttgacaagtgtaccaaaaactatggaagtactaataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 453863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 572 - 624
Target Start/End: Original strand, 41836433 - 41836485
Alignment:
Q  572 ttaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaatt 624  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||||| |||||    
T  41836433 ttaagaccttcgaatcctccgaagttctcctatggtaatttgcactcataatt 41836485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 567 - 657
Target Start/End: Complemental strand, 44008335 - 44008245
Alignment:
Q  567 tatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagatta 657  Q
    |||| ||| |||||| ||||||| ||||| ||  || ||||||| |||||||||| ||||| ||||| |||| |||||| |||||||||||    
T  44008335 tatggttatgaccttcgaatcctccgaagctcgcctttggtaatctgcactcctagttcaaacaatgattatttagtttcacgatagatta 44008245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 384 - 448
Target Start/End: Complemental strand, 13332429 - 13332365
Alignment:
Q  384 caaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    ||||||||||||||||||||  || || |||| || |||||||||||||||||| |||| |||||    
T  13332429 caaaactatcgaagtagtaataaagtttgtatccatgaggaccgttgttaatttatacttagcaa 13332365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 22173710 - 22173744
Alignment:
Q  370 tttggcaagtgaaccaaaactatcgaagtagtaaa 404  Q
    ||||||||||| |||||||||||||||||||||||    
T  22173710 tttggcaagtgtaccaaaactatcgaagtagtaaa 22173744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 370 - 627
Target Start/End: Original strand, 20 - 273
Alignment:
Q  370 tttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaaggatg 469  Q
    |||||||||||||||||| ||||||||||||||||||| ||||| | |||||||||||||||||| | | ||| |||||        ||||||||||||     
T  20 tttggcaagtgaaccaaagctatcgaagtagtaaataa-ttcgt-tccacgaggaccgttgttaactacaacttagcaatttcttt-atcaaaaaggata 116  T
Q  470 tataaatttatattgattgccctaggcagttgagttgttttgtaacataaacgtaaataaaacaataaaagttggttttaagaatattaaagataagtat 569  Q
    | | || ||  || | ||||||||||||||||||||| ||| ||||||||||  |   ||||||||||||||||||||||||||||||| ||| ||||||    
T  117 tgttaaattcaatgg-ttgccctaggcagttgagttggtttttaacataaacaaattaaaaacaataaaagttggttttaagaatattagagagaagtat 215  T
Q  570 gattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaa 627  Q
    | ||||||| || ||||||| |||| |||| ||||| |||||||||||||||||||||    
T  216 ggttaagacattcgaatcctccgaatttctcctatgataatttgcactcctaattcaa 273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 460 - 688
Target Start/End: Complemental strand, 10010 - 9781
Alignment:
Q  460 aaaaaggatgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaacaataaa-agttggttttaagaatatt 557  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||| ||| |||||||||||  |   ||||||||||| | |||||||| |||| |||    
T  10010 aaaaaggatgtataaatttatattggtc-ccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaataattggtttttagaaaatt 9912  T
Q  558 aaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcct-aattcaatcaatgtttatctagtttaacgatagatt 656  Q
     | || ||||||| ||||| |||| ||||||| ||||| ||| |||||| ||||||||||||| ||| ||||||||| |||| |||||| ||||  ||||    
T  9911 ga-gagaagtatggttaagtccttcgaatcctccgaagctctcctatggcaatttgcactcctaaatacaatcaatgattatttagtttcacgacggatt 9813  T
Q  657 aacaaagtaattatacccaatctctttaccta 688  Q
    |||  ||||||| ||||||||||||| |||||    
T  9812 aacttagtaattctacccaatctcttgaccta 9781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 550 - 682
Target Start/End: Original strand, 5999 - 6131
Alignment:
Q  550 agaatattaaagataagtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacg 649  Q
    |||| |||| ||| ||||||| |||||||||| ||||||| ||| ||||| ||||||||||||||||| ||||||||| ||||| |||||||| || |||    
T  5999 agaaaattagagagaagtatggttaagaccttcgaatcctccgaggttctcctatggtaatttgcactactaattcaaacaatgattatctaggttcacg 6098  T
Q  650 atagattaacaaagtaattatacccaatctctt 682  Q
    | ||||||||| | ||| | |||||||||||||    
T  6099 acagattaacacaataactctacccaatctctt 6131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 572 - 688
Target Start/End: Original strand, 2814 - 2930
Alignment:
Q  572 ttaagacctttgaatcctacgaagttcttctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattata 671  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||||| ||||||||||| |||| |||||| |||| |||||||   ||||||| ||    
T  2814 ttaagacctttgaatcctccgaagctctcctatggtaatttgcactcctagttcaatcaatgattatatagtttcacgaaagattaaggtagtaattcta 2913  T
Q  672 cccaatctctttaccta 688  Q
    || |||||||| |||||    
T  2914 ccaaatctcttgaccta 2930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 368 - 448
Target Start/End: Original strand, 2626 - 2706
Alignment:
Q  368 gatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    ||||||||||||| |||||||||||||||||| |||||||  |||||| |||||||||||||||||| |||||||||||||    
T  2626 gatttggcaagtggaccaaaactatcgaagtaataaataagatcgtatccacgaggaccgttgttaacttctactcagcaa 2706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 369 - 688
Target Start/End: Original strand, 24193 - 24510
Alignment:
Q  369 atttggcaagtgaaccaaaa-ctatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaannnnnnnnatcaaaaagga 467  Q
    |||||||||||| ||||||| ||||||||||||||| |||||| || | ||||||||| ||  |||| ||||||||| |||        || ||||||||    
T  24193 atttggcaagtgtaccaaaagctatcgaagtagtaa-taaatttgtttccacgaggactgtatttaacttctactcaacaatttcatt-attaaaaagga 24290  T
Q  468 tgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaacaataaa-agttggttttaagaatattaaagataa 565  Q
    ||||||||||  ||||| | ||||||||||||||||||| ||| ||||  |||||  |   ||||||||||| | |||||||| |||| ||| | || ||    
T  24291 tgtataaattattattggt-gccctaggcagttgagttgatttagtaa--taaactgattaaaaacaataaagaattggtttttagaaaattga-gagaa 24386  T
Q  566 gtatgattaagacctttgaatcctacgaagttcttctatggtaatttgcactcct-aattcaatcaatgtttatctagtttaacgatagattaacaaagt 664  Q
    | ||| ||||| |||| ||||||| ||||| ||| |||||||||||||||||||| ||| |||| |||| |||| |||| | ||||  |||||||  |||    
T  24387 gcatggttaagtccttcgaatcctccgaagctctcctatggtaatttgcactcctaaatacaataaatgattatttagtatcacgacggattaacttagt 24486  T
Q  665 aattatacccaatctctttaccta 688  Q
    |||| ||||||||||||| |||||    
T  24487 aattctacccaatctcttgaccta 24510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 33738 - 33817
Alignment:
Q  369 atttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||||||| ||||||||||||||||||||||  || || |||| |||||||||||||||||||||||||| |||||    
T  33738 atttggcaagtgtaccaaaactatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctacttagcaa 33817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 19517 - 19596
Alignment:
Q  369 atttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||||||| ||||||||| || |||||||||  || ||||||| |||||||||||||||||||||||||| |||||    
T  19517 atttggcaagtgtaccaaaactgtcaaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 19596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 601 - 682
Target Start/End: Original strand, 7232 - 7313
Alignment:
Q  601 ctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaacaaagtaattatacccaatctctt 682  Q
    ||||||||||||| ||||||||||||||||||| |||| |||||| |||| ||||||||  ||||||| ||  |||||||||    
T  7232 ctatggtaatttgtactcctaattcaatcaatgattatttagtttcacgacagattaacttagtaattctattcaatctctt 7313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 601 - 659
Target Start/End: Complemental strand, 2699 - 2641
Alignment:
Q  601 ctatggtaatttgcactcctaattcaatcaatgtttatctagtttaacgatagattaac 659  Q
    ||||||||| ||||||||||||||||||||||| |||| |||||| |||| ||||||||    
T  2699 ctatggtaacttgcactcctaattcaatcaatgattatttagtttcacgacagattaac 2641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 361 - 448
Target Start/End: Complemental strand, 3748 - 3664
Alignment:
Q  361 tgatagggatttggcaagtgaaccaaaactatcgaagtagtaaataaattcgtattcacgaggaccgttgttaatttctactcagcaa 448  Q
    |||||||  ||||||||||| |||||  ||||||||||| ||||   ||| |||| |||||||||||||||||| |||||||||||||    
T  3748 tgataggattttggcaagtgtaccaattctatcgaagtaataaa---atttgtatccacgaggaccgttgttaacttctactcagcaa 3664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 14094 - 14128
Alignment:
Q  370 tttggcaagtgaaccaaaactatcgaagtagtaaa 404  Q
    ||||||||||| |||||||||||||||||||||||    
T  14094 tttggcaagtgtaccaaaactatcgaagtagtaaa 14128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 19627 - 19593
Alignment:
Q  370 tttggcaagtgaaccaaaactatcgaagtagtaaa 404  Q
    ||||||||||| |||||||||||||||||||||||    
T  19627 tttggcaagtgtaccaaaactatcgaagtagtaaa 19593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 29706 - 29672
Alignment:
Q  370 tttggcaagtgaaccaaaactatcgaagtagtaaa 404  Q
    ||||||||||| |||||||||||||||||||||||    
T  29706 tttggcaagtgtaccaaaactatcgaagtagtaaa 29672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University