View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21214_low_13 (Length: 239)

Name: NF21214_low_13
Description: NF21214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21214_low_13
NF21214_low_13
[»] chr4 (3 HSPs)
chr4 (18-231)||(43942729-43942942)
chr4 (114-199)||(22073958-22074043)
chr4 (18-78)||(2501056-2501116)
[»] chr3 (2 HSPs)
chr3 (18-231)||(5884995-5885208)
chr3 (18-119)||(54946124-54946225)
[»] scaffold0182 (1 HSPs)
scaffold0182 (18-231)||(10741-10954)
[»] chr6 (3 HSPs)
chr6 (17-231)||(16856488-16856716)
chr6 (119-231)||(26615892-26616004)
chr6 (119-231)||(26721820-26721932)
[»] chr7 (1 HSPs)
chr7 (18-119)||(47933322-47933423)
[»] chr1 (1 HSPs)
chr1 (98-208)||(51167421-51167531)
[»] chr2 (2 HSPs)
chr2 (107-206)||(653324-653423)
chr2 (88-200)||(40072113-40072225)
[»] chr5 (1 HSPs)
chr5 (99-206)||(27280853-27280953)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 43942729 - 43942942
Alignment:
Q  18 ctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgtgtataaatatgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43942729 ctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgtgtataaatatgt 43942828  T
Q  118 gattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccacccattt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43942829 gattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccactcattt 43942928  T
Q  218 taactcttcatctc 231  Q
    ||||||||||||||    
T  43942929 taactcttcatctc 43942942  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 22073958 - 22074043
Alignment:
Q  114 atgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattac 199  Q
    |||| |||||| ||||||||||||||||||||||||||||||| ||||| |||||||||  || |||||||||||| ||| |||||    
T  22073958 atgtaattttgcgcaccaaattttgggttttgttcatcaccactttcaaacaacaattgtataattcatcttcaattttgaattac 22074043  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 2501116 - 2501056
Alignment:
Q  18 ctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgtttttta 78  Q
    ||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  2501116 ctttctacatttttcctcaaccatgctatccaaatgttctaatcttatttcatgtttttta 2501056  T

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Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 5885208 - 5884995
Alignment:
Q  18 ctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgtgtataaatatgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5885208 ctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgtgtataaatatgt 5885109  T
Q  118 gattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccacccattt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5885108 gattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccactcattt 5885009  T
Q  218 taactcttcatctc 231  Q
    ||||||||||||||    
T  5885008 taactcttcatctc 5884995  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 54946225 - 54946124
Alignment:
Q  18 ctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgtgtataaatatgt 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54946225 ctttctacacttttcctctaccatgctatctaaatgttataatcttatatcatgttttttactatcgtgtcattgagaaacattgtgtgtataaatatgt 54946126  T
Q  118 ga 119  Q
    ||    
T  54946125 ga 54946124  T

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Target: scaffold0182 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 10954 - 10741
Alignment:
Q  18 ctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgtgtataaatatgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10954 ctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgtatataaatatgt 10855  T
Q  118 gattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccacccattt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  10854 gattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtcttactgttttttccactcattt 10755  T
Q  218 taactcttcatctc 231  Q
    ||||| ||||||||    
T  10754 taacttttcatctc 10741  T

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Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 16856488 - 16856716
Alignment:
Q  17 actttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgtgtataaatatg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  16856488 actttctacacttttcctctaccatgctatctaaatgttctaatctcatatcatgttttttactatcacatcattgagaaacattgtgtgtataaatatg 16856587  T
Q  117 tgattttgt--------------gcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgt 202  Q
    |||||||||              ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  16856588 tgattttgtgcaccaaattttgggcaccaaattttgggttttgttcatcaccgcattcaagcaacaattggttagttcatcttcaatattgtattacttt 16856687  T
Q  203 tttttccacccattttaactcttcatctc 231  Q
    ||||||||| |||||||||||||||||||    
T  16856688 tttttccactcattttaactcttcatctc 16856716  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 26616004 - 26615892
Alignment:
Q  119 attttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccacccatttt 218  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  ||||||||||||| ||||||||||| |||||||| |||| ||| ||| ||||||    
T  26616004 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactcatttt 26615905  T
Q  219 aactcttcatctc 231  Q
    |||||||||||||    
T  26615904 aactcttcatctc 26615892  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 26721932 - 26721820
Alignment:
Q  119 attttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccacccatttt 218  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  ||||||||||||| ||||||||||| |||||||| |||| ||| ||| ||||||    
T  26721932 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactcatttt 26721833  T
Q  219 aactcttcatctc 231  Q
    |||||||||||||    
T  26721832 aactcttcatctc 26721820  T

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Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 47933423 - 47933322
Alignment:
Q  18 ctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgtgtataaatatgt 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47933423 ctttctacacttttcctctaccatgctatctaaatgttataatcttatatcatgttttttactatcgtgtcattgagaaacattgtgtgtataaatatgt 47933324  T
Q  118 ga 119  Q
    ||    
T  47933323 ga 47933322  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 51167531 - 51167421
Alignment:
Q  98 cattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtatt 197  Q
    ||||||||||||||||  |||| |||||||| |||||||||| |||||||||||||||| | |||||||| ||||  | |||| |||||||| || ||||    
T  51167531 cattgtgtgtataaattcgtgaatttgtgcagcaaattttggattttgttcatcaccacttccaagcaactattgaattgttcctcttcaattttctatt 51167432  T
Q  198 actgttttttc 208  Q
    | |||||||||    
T  51167431 attgttttttc 51167421  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 653423 - 653324
Alignment:
Q  107 tataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttt 206  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||| || ||||||||| |||||| | |  ||||||| || |||||||| |||||||    
T  653423 tataaatatgttattttttgcaccaaagtttgggttttgttcatcacaactttcaagcaataattggatggaacatcttcgattttgtattattgttttt 653324  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 40072225 - 40072113
Alignment:
Q  88 cattgagaaacattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttca 187  Q
    |||||| ||| ||||||||||||| |||||  |||  | |||||||||||||||||||||  ||| | | ||||||||| |||||| || ||||||||||    
T  40072225 cattgaaaaagattgtgtgtataagtatgtagtttctttcaccaaattttgggttttgttgttcatccctttcaagcaataattggataattcatcttca 40072126  T
Q  188 atattgtattact 200  Q
    || ||||||||||    
T  40072125 attttgtattact 40072113  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 27280953 - 27280853
Alignment:
Q  99 attgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtatta 198  Q
    |||||| ||||||||||||||||||||| ||       || ||||||| ||||||||| ||||||||| |||||| ||||||||||||||| || ||||     
T  27280953 attgtgcgtataaatatgtgattttgtgtac-------tgagttttgtccatcaccactttcaagcaataattggatagttcatcttcaattttatattg 27280861  T
Q  199 ctgttttt 206  Q
     |||||||    
T  27280860 atgttttt 27280853  T

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