View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21214_low_2 (Length: 680)
Name: NF21214_low_2
Description: NF21214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21214_low_2 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0002 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 1 - 675
Target Start/End: Complemental strand, 438640 - 437966
Alignment:
| Q |
1 |
ctccaccaacctatgttgttttaacatcagcagttattttaatgactatagtggtagctcccatcataaatgtcatatacaagcccaaaaagagatatga |
100 |
Q |
| |
|
|||||||||| |||| ||||||||| || |||||| || |||||||||||||||| ||||| |||| |||| |||||||||||||| |||||||| ||| |
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| T |
438640 |
ctccaccaacatatgctgttttaacctctgcagttcttctaatgactatagtggtggctcctgtcatcaatgccatatacaagcccagaaagagatttga |
438541 |
T |
|
| Q |
101 |
gcaaaacaagctaaagactatacaaaagctcagacttgatgcagagcttaggattctagcatgcgttcacaatactcgtcaggccgcaggggttattagc |
200 |
Q |
| |
|
| | || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |
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|
| T |
438540 |
gaataataagctaaagactatacaaaagcttagacttgatgcagagcttaggattctagcatgtgttcacaatactcgtcaggccgtaggagttattagc |
438441 |
T |
|
| Q |
201 |
ctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgttggacgtgttggtgcccttgttgcttctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
438440 |
ctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgttggacgtgttggtgcccttgttgcttctc |
438341 |
T |
|
| Q |
301 |
atatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaaacattaccaatacctttgaagcattcaaagaggc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
438340 |
atatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaagcattaccaatacctttgaagcattcaaagaggc |
438241 |
T |
|
| Q |
401 |
atatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaagatatatacaactcggctaatgaaaaatgtacaagtttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
438240 |
atatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaagatatatacaactcggctaatgaaaaatgtacaagtttg |
438141 |
T |
|
| Q |
501 |
attctccttccattccataaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaagatataaacttgaatgtgatgcaaagtgcac |
600 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
438140 |
attctccttccattccacaaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaagatataaacttgaatgtgatgcaaagtgcac |
438041 |
T |
|
| Q |
601 |
cttgctctgtgggaatatttgtggaccgtgatcttgggtcattaccaactttaaattttcgtatttgtatgatct |
675 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
438040 |
cttgctctgtgggaatatttgtggaccgtgatcttgggtcattaccaactttaaattttcgtatttgtatgatct |
437966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 675
Target Start/End: Original strand, 28608264 - 28608938
Alignment:
| Q |
1 |
ctccaccaacctatgttgttttaacatcagcagttattttaatgactatagtggtagctcccatcataaatgtcatatacaagcccaaaaagagatatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28608264 |
ctccaccaacctatgttgttttaacatcagcagttattttaatgactatagtggtagctcccatcataaatgtcatatacaagcccaaaaagagatatga |
28608363 |
T |
|
| Q |
101 |
gcaaaacaagctaaagactatacaaaagctcagacttgatgcagagcttaggattctagcatgcgttcacaatactcgtcaggccgcaggggttattagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || | ||||||||||||| |
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|
| T |
28608364 |
gcaaaacaagctaaagactatacaaaagctcagacttgatgcagagcttaggattctagcatgtgttcataatactcgtcaagctgtaggggttattagc |
28608463 |
T |
|
| Q |
201 |
ctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgttggacgtgttggtgcccttgttgcttctc |
300 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||| ||| |||||| ||||||||||||||| |||||||||||| |||||| ||||||||||||| |
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|
| T |
28608464 |
ctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaactcgttggacgtgatggtgcacttgttgcttctc |
28608563 |
T |
|
| Q |
301 |
atatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaaacattaccaatacctttgaagcattcaaagaggc |
400 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |||| ||||||||| ||| |||||| |
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|
| T |
28608564 |
atatggagaagcctagtggccaatctggaacacaaaatcttacaagatcccagatagagttagaaagtattgataataaatttgaagcactcagagaggc |
28608663 |
T |
|
| Q |
401 |
atatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaagatatatacaactcggctaatgaaaaatgtacaagtttg |
500 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||||||||| | |||||||||||||||||||| |||||||| | | ||| |||||| |||||| ||| |
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|
| T |
28608664 |
atatgatgctatcagagtagaaacgttaaatgttgtgtccgaatatgcaaccattcacgaagacatatacaatttagttaacgaaaaacatacaagcttg |
28608763 |
T |
|
| Q |
501 |
attctccttccattccataaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaagatataaacttgaatgtgatgcaaagtgcac |
600 |
Q |
| |
|
||||||||||||||||| |||||||||||| | ||||||||| | ||||||||| || ||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
28608764 |
attctccttccattccacaaacaactaagtccggaaggtgcatttgaaacaactgatgttgcgttcaaagatataaacttgaatgtgatgcaaagtgcac |
28608863 |
T |
|
| Q |
601 |
cttgctctgtgggaatatttgtggaccgtgatcttgggtcattaccaactttaaattttcgtatttgtatgatct |
675 |
Q |
| |
|
|||||||||||||| ||||||| || ||| |||||||||| ||||||| | |||||||||||||||||||||| |
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|
| T |
28608864 |
cttgctctgtgggattatttgttgatcgtaatcttgggtccttaccaaaaatgaattttcgtatttgtatgatct |
28608938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 675
Target Start/End: Original strand, 13659635 - 13660309
Alignment:
| Q |
1 |
ctccaccaacctatgttgttttaacatcagcagttattttaatgactatagtggtagctcccatcataaatgtcatatacaagcccaaaaagagatatga |
100 |
Q |
| |
|
||||||| ||| ||| ||||||||| | ||||| ||||||||||||||||||| |||||| || ||||||||||| ||||| | |||||||| ||| |
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|
| T |
13659635 |
ctccacccacccatgctgttttaactgctgcagtacttttaatgactatagtggtgcctcccacaatcaatgtcatatataagccgagaaagagatttga |
13659734 |
T |
|
| Q |
101 |
gcaaaacaagctaaagactatacaaaagctcagacttgatgcagagcttaggattctagcatgcgttcacaatactcgtcaggccgcaggggttattagc |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| ||| |||| ||||| |||||||||| ||| |
|
|
| T |
13659735 |
gcagaacaagctaaagactatacaaaagcttagacttgatgcagagcttaggattcttacatgtgttcataatgctcgccaggctacaggggttatcagc |
13659834 |
T |
|
| Q |
201 |
ctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgttggacgtgttggtgcccttgttgcttctc |
300 |
Q |
| |
|
||| |||||| ||||||||| |||||||||||||||||||||||||| | ||||||||| ||||| || |||||| |||||| |||||||| ||| |
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|
| T |
13659835 |
ctcgttgaatctttcaatgctactagaatttcccctatacatgttttcgcactttaccttattgaactcaaaggacgtactggtgcacttgttgccgctc |
13659934 |
T |
|
| Q |
301 |
atatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaaacattaccaatacctttgaagcattcaaagaggc |
400 |
Q |
| |
|
||||||| || ||||| |||| ||||| | |||||||||||| |||||| ||||| ||||| ||||| ||||| ||||||||| | |||||| |
|
|
| T |
13659935 |
atatggataagcctagtaaccaacctggagcgcaaaatcttacaagatcccaagtagagcaagaaagcattaataatacatttgaagcacttggagaggc |
13660034 |
T |
|
| Q |
401 |
atatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaagatatatacaactcggctaatgaaaaatgtacaagtttg |
500 |
Q |
| |
|
|||||||||| | |||||| |||| |||||||||||||| |||| |||||||||| || || ||||| ||||| |||||||||||| | ||||| || |
|
|
| T |
13660035 |
atatgatgctgtcagagtcgaaaccttaaatgttgtgtcatcctattcaaccattcatgaggacatatataactctgctaatgaaaaacgcacaagcatg |
13660134 |
T |
|
| Q |
501 |
attctccttccattccataaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaagatataaacttgaatgtgatgcaaagtgcac |
600 |
Q |
| |
|
||| | ||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| | ||| |
|
|
| T |
13660135 |
attatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaaccagaatgtgatgcaaacttcac |
13660234 |
T |
|
| Q |
601 |
cttgctctgtgggaatatttgtggaccgtgatcttgggtcattaccaactttaaattttcgtatttgtatgatct |
675 |
Q |
| |
|
|||||||||||||||| ||||| || ||| ||||||||||| || ||| | || ||||| ||||||||||||| |
|
|
| T |
13660235 |
cttgctctgtgggaatctttgttgatcgtaatcttgggtcaataacaaaaatgaactttcgaatttgtatgatct |
13660309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 37 - 646
Target Start/End: Original strand, 13652171 - 13652780
Alignment:
| Q |
37 |
ttttaatgactatagtggtagctcccatcataaatgtcatatacaagcccaaaaagagatatgagcaaaacaagctaaagactatacaaaagctcagact |
136 |
Q |
| |
|
||||||||||||| ||||| ||| | | || |||| ||||| ||||||| ||||||| |||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
13652171 |
ttttaatgactattgtggttcctctcgttattaatgcgatatataagcccaggaagagatttgagcagaacaagctaaagactatacaaaagcttagact |
13652270 |
T |
|
| Q |
137 |
tgatgcagagcttaggattctagcatgcgttcacaatactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccct |
236 |
Q |
| |
|
||||||||| |||||||||||| |||| |||||||||||||| || || ||||||||| | ||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
13652271 |
tgatgcagaacttaggattctaacatgtgttcacaatactcgccacgctataggggttatcaacctcattcagtctttcaatgccactagaatttcccct |
13652370 |
T |
|
| Q |
237 |
atacatgtttttggcctttaccttgttgaaatcgttggacgtgttggtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaa |
336 |
Q |
| |
|
|||||||||||| ||||||||| ||||| || |||||| ||||| ||||||||| |||||||||| || |||||| ||| ||||| |||||| |
|
|
| T |
13652371 |
atacatgttttttcactttaccttattgaactcaaaggacgtaccggtgcacttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaa |
13652470 |
T |
|
| Q |
337 |
atcttacacaatcccagctagagttagaaaacattaccaatacctttgaagcattcaaagaggcatatgatgctattagagtccaaacactaaatgttgt |
436 |
Q |
| |
|
||||||| |||||| ||||| ||||| ||||| ||||| ||||||||||| |||||| || |||||| ||||||||| ||| |||||||||| |
|
|
| T |
13652471 |
atcttaccagttcccaggtagagcaagaaagcattaataatacatttgaagcatttggagaggcgtacgatgctgttagagtccgaaccttaaatgttgt |
13652570 |
T |
|
| Q |
437 |
gtcaaactatgcaaccattcacgaagatatatacaactcggctaatgaaaaatgtacaagtttgattctccttccattccataaacaactaagttcagaa |
536 |
Q |
| |
|
|||| |||||||||||||||||| || ||||| || || |||||||||||| ||||| ||||| | ||||||||||||||||| |||||||| | |
|
|
| T |
13652571 |
gtcatcctatgcaaccattcacgaggacatatataattcagctaatgaaaaacacacaagcatgattatacttccattccataaacacttaagttcatta |
13652670 |
T |
|
| Q |
537 |
ggtgcactcgaaacaactaatactgcatacaaagatataaacttgaatgtgatgcaaagtgcaccttgctctgtgggaatatttgtggaccgtgatcttg |
636 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||| || ||| |||||| |
|
|
| T |
13652671 |
ggtgcactcgaaacaactagtgttgcatacaaagatataaacctgaatgtgatgcaaactgcaccttgctctgtgggaatctttgttgatcgtaatcttg |
13652770 |
T |
|
| Q |
637 |
ggtcattacc |
646 |
Q |
| |
|
|| ||||||| |
|
|
| T |
13652771 |
ggacattacc |
13652780 |
T |
|
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